| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 55 [0] | [0] 90 | yfcTU | predicted outer membrane export usher protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2397528 | 0 (0.000) | 54 (0.690) | 43/98 | 0.6 | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 2397543 = | 0 (0.000) | 83 (1.090) | 52/96 | 0.2 | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
AGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2397480‑2397528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > REL606/2774435‑2774480 AGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTG > 1:5088670/1‑51AGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTG < 1:6603582/51‑1 GGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGT < 1:1841845/51‑1 GGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGT > 1:2542310/1‑51 CTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTAC < 1:2627770/51‑1 TTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACT < 1:6269662/51‑1 TTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACT > 1:2485518/1‑51 CACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCC < 1:6851666/51‑1 CACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCC > 1:1488407/1‑51 ACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCC > 1:6839150/1‑51 ACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCC > 1:5451778/1‑51 CCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCA < 1:4161441/51‑1 CAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAA < 1:3665930/51‑1 AGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAA < 1:3916039/51‑1 AGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAA < 1:5779631/51‑1 AGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAA < 1:6609783/51‑1 GAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAA > 1:2764003/1‑51 AGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAA < 1:6632142/51‑1 AGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAA > 1:2096668/1‑51 AAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGT > 1:396857/1‑51 AAAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGT > 1:1382050/1‑51 AAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTT > 1:3800926/1‑51 AAAATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTT > 1:1565489/1‑51 AATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGG < 1:2700337/51‑1 ATCCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGA > 1:710027/1‑51 CCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACA > 1:4710494/1‑51 CCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACA > 1:5772451/1‑51 CCCCCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGAC < 1:811240/50‑1 CCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTT > 1:6583840/1‑51 CCCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTT < 1:519540/43‑1 CCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:3262745/1‑51 CCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:4455531/51‑1 CCTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:2609976/51‑1 CCTCGACATGGTGGCCCCACTCTGTACTGACCCC‑AAAAGTTGGACAGTTAA < 1:1263470/51‑1 CTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:3468992/51‑1 CTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:1885329/51‑1 CTCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:3011246/51‑1 TCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:5261948/51‑1 TCGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:4730869/1‑51 CGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:7227021/51‑1 CGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:6697409/51‑1 CGACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:3813920/1‑50 GACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:1084294/1‑51 GACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:2296283/51‑1 ACATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:2852399/51‑1 ATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 1:967155/1‑51 ATGGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA < 1:6421881/51‑1 GGTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG < 1:5877883/51‑1 GTGGCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGC < 1:3720266/51‑1 GCCCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA < 1:3464693/51‑1 CCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 1:3611424/51‑1 CCCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 1:4887339/1‑51 CCACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:1775377/1‑51 CACTCTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG < 1:2877587/51‑1 AGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2397480‑2397528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > REL606/2774435‑2774480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |