| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 55 [0] | [0] 90 | yfcTU | predicted outer membrane export usher protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2397528 | 0 (0.000) | 54 (0.690) | 43/98 | 0.6 | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 2397543 = | 0 (0.000) | 83 (1.090) | 52/96 | 0.2 | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2397592‑2397543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < REL606/2775877‑2775829 CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAT < 1:51920/51‑1CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAT > 1:6941182/1‑51CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAT < 1:1543456/51‑1 TCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATG < 1:6586252/51‑1 CGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGT < 1:6367150/51‑1 CGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGT < 1:5600665/51‑1 CGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGT < 1:2379849/51‑1 ATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTAC > 1:3065887/1‑51 ATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTAC < 1:6531245/51‑1 ATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTAC > 1:84278/1‑51 TGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACT < 1:7284562/51‑1 TGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACT < 1:7203907/51‑1 TGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACT < 1:6545857/51‑1 TGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACT > 1:7230859/1‑51 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG > 1:5632449/1‑51 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG > 1:2207184/1‑51 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG < 1:188041/51‑1 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG > 1:2154949/1‑51 CCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGC > 1:2463858/1‑51 CCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGC > 1:3680341/1‑51 CCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGC > 1:3400327/1‑51 CATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCA < 1:3081149/51‑1 ATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCAC < 1:2985948/51‑1 CCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCA < 1:2503288/51‑1 CCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCA < 1:3068961/51‑1 CTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCAT < 1:5680925/51‑1 TTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATT > 1:4698038/1‑51 TTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATT < 1:3144463/51‑1 TACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTT < 1:5227550/51‑1 ACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTT < 1:3587211/51‑1 CTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTG > 1:1358180/1‑51 CTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTT < 1:6534968/50‑1 CGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTT < 1:4464321/51‑1 GCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTG < 1:5278892/51‑1 GCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTG < 1:6930257/51‑1 CCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGG > 1:4368799/1‑51 CCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGG < 1:4970785/51‑1 CCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGG < 1:5443100/51‑1 CCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGA < 1:4352034/51‑1 CAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGAC < 1:6219303/51‑1 CAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGAC > 1:3530755/1‑51 CAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGAC < 1:5461063/51‑1 AGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACG > 1:4148826/1‑51 AGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACG < 1:5021520/51‑1 AGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACG > 1:479060/1‑51 AGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACG > 1:4879448/1‑51 GCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGAT > 1:5350372/1‑51 GCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGAT < 1:4469990/51‑1 CCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATG > 1:5413801/1‑51 CCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTT < 1:2309520/39‑1 CAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGA > 1:1340649/1‑51 CAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGA < 1:4284199/51‑1 CAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGA > 1:6753704/1‑51 AGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAA < 1:5078254/51‑1 GTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAAT < 1:2915369/51‑1 GTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAAT < 1:2071547/51‑1 TCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGG > 1:2826688/1‑51 GTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAA < 1:3334985/51‑1 GTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAA < 1:448989/51‑1 TTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 1:1831320/1‑51 TTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 1:4497130/1‑51 TATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 1:3055194/1‑51 ATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG > 1:92604/1‑51 ATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 1:433880/51‑1 ATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 1:3218804/51‑1 TAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC > 1:2619603/1‑51 TAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 1:2642653/51‑1 AAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC > 1:7282360/1‑51 AAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC > 1:3976225/1‑51 AGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC < 1:2006422/51‑1 AGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC < 1:1518845/51‑1 GTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:1634502/51‑1 TCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA > 1:4013904/1‑51 TCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA > 1:1855521/1‑51 TCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:4887213/51‑1 TCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:4675171/51‑1 CATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:3401355/1‑51 ATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:6861964/51‑1 ATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:5236926/51‑1 ATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > 1:1478925/1‑51 ATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > 1:4644089/1‑51 TGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 1:325100/51‑1 TGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 1:4245245/51‑1 TGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 1:2865395/51‑1 GATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT > 1:5257687/1‑51 GATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT > 1:6930783/1‑51 GATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT > 1:6505409/1‑51 CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2397592‑2397543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < REL606/2775877‑2775829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |