| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 929,574 | IS150 (+) +3 bp | coding (946‑948/1653 nt) | hcp ← | hydroxylamine reductase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 666130 | NA (NA) | 77 (1.010) | 50/96 | 0.2 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 929574 = | 0 (0.000) | coding (948/1653 nt) | hcp | hydroxylamine reductase | |||||
| * | ? | REL606 | = 929576 | 0 (0.000) | 65 (0.820) | 45/100 | 0.6 | 100% | coding (946/1653 nt) | hcp | hydroxylamine reductase |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 153 total aligned reads displayed.
GGTCCAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGAT > REL606/929526‑929626 | gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGtt > 1:740593‑M2/49‑51 (MQ=255)gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGtt < 1:1180387‑M2/3‑1 (MQ=255)gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGtt < 1:5196348‑M2/3‑1 (MQ=255) gTCCAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTt > 1:7125989‑M1/1‑50 (MQ=255) gTCCAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTt < 1:4759079‑M1/51‑2 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTc < 1:5563828‑M2/4‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTc < 1:1265372‑M2/4‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCg > 1:2772029‑M2/47‑51 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGa > 1:6389685‑M2/46‑51 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGa < 1:3243402‑M2/6‑1 (MQ=255) ccAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgt < 1:3083372‑M1/51‑4 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAg > 1:1821467‑M2/45‑51 (MQ=255) cAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgta > 1:5245955‑M1/1‑47 (MQ=255) cAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgta < 1:2365664‑M1/51‑5 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtc > 1:5103565‑M2/42‑51 (MQ=255) aTACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactg < 1:6910652‑M1/51‑8 (MQ=255) tACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgc < 1:3105733‑M1/51‑9 (MQ=255) aCGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgca < 1:1375705‑M1/51‑10 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtcatc < 1:62050‑M2/13‑1 (MQ=255) gATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacc > 1:6734480‑M1/1‑40 (MQ=255) gATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacc > 1:5557159‑M1/1‑40 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtcatca > 1:2564145‑M2/38‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtcatca > 1:5750520‑M2/38‑51 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCAc < 1:6564919‑M2/15‑1 (MQ=255) aTCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcaccc > 1:6500280‑M1/1‑39 (MQ=255) tCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcaccca < 1:397038‑M1/51‑14 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACg > 1:3883298‑M2/36‑51 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGa < 1:4866626‑M2/17‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGAt > 1:2234362‑M2/34‑51 (MQ=255) gTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccatt > 1:654290‑M1/1‑36 (MQ=255) gTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccatt < 1:2681960‑M1/51‑16 (MQ=255) gtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATg > 1:2754867‑M2/33‑51 (MQ=255) gtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATg < 1:844560‑M2/19‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATg > 1:367530‑M2/33‑51 (MQ=255) tttaactgtccaactttttggggtcagtataGTTCGAGGTCATCACGATgg > 1:5868659‑M2/32‑51 (MQ=255) tttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATgg > 1:3687671‑M2/32‑51 (MQ=255) ttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACg < 1:5174614‑M2/16‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACg < 1:1253361‑M2/16‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATggg < 1:4191177‑M2/21‑1 (MQ=255) tAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgt > 1:5282923‑M1/1‑32 (MQ=255) aaGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgtt < 1:4421427‑M1/51‑21 (MQ=255) aaGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgtt < 1:1827403‑M1/51‑21 (MQ=255) actgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGcc > 1:2500087‑M2/28‑51 (MQ=255) actgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGcc > 1:7091118‑M2/28‑51 (MQ=255) gcgcCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttgg < 1:3764822‑M1/51‑23 (MQ=255) gcgcCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttgg > 1:1531737‑M1/1‑29 (MQ=255) gcgcCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttgg < 1:6310741‑M1/51‑23 (MQ=255) tgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAg > 1:813145‑M2/26‑51 (MQ=255) tgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAg < 1:4318198‑M2/26‑1 (MQ=255) tgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAg < 1:934418‑M2/26‑1 (MQ=255) cgcCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttgga < 1:360225‑M1/51‑24 (MQ=255) gcCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttggac < 1:7236225‑M1/51‑25 (MQ=255) ccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGa < 1:4622690‑M2/29‑1 (MQ=255) actttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAAc < 1:2217107‑M2/32‑1 (MQ=255) ggTTGGGTCGATGATGCAGTTtgtactgcacccattttgttggacgatgaa > 1:6972089‑M1/1‑21 (MQ=255) ggTTGGGTCGATGATGCAGTTtgtactgcacccattttgttggacgatgaa > 1:5013767‑M1/1‑21 (MQ=255) ctttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACg > 1:6627211‑M2/19‑51 (MQ=255) ctttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACg < 1:6422160‑M2/33‑1 (MQ=255) tttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGa > 1:6207261‑M2/18‑51 (MQ=255) ttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAg < 1:4664185‑M2/35‑1 (MQ=255) ttGGGTCGATGATGCAGTTtgtactgcacccattttgttggacgatgaaat < 1:4382318‑M1/51‑33 (MQ=255) tttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGc < 1:1563267‑M2/36‑1 (MQ=255) tttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGc < 1:6855647‑M2/36‑1 (MQ=255) ttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCg > 1:5141550‑M2/15‑51 (MQ=255) tggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGa > 1:4319564‑M2/14‑51 (MQ=255) ggTCGATGATGCAGTTtgtactgcacccattttgttggacgatgaaatgga > 1:7038573‑M1/1‑16 (MQ=255) ggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGaa > 1:4958556‑M2/13‑51 (MQ=255) gggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAAc > 1:6104423‑M2/12‑51 (MQ=255) ggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACt > 1:2617218‑M2/11‑51 (MQ=255) ggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACt < 1:3639759‑M2/41‑1 (MQ=255) cGATGATGCAGTTtgtactgcacccattttgttggacgatgaaatggaata < 1:4679461‑M1/51‑39 (MQ=255) tcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTcc > 1:6938184‑M2/9‑51 (MQ=255) atgatgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagc > 1:5253863‑M1/1‑11 (MQ=255) tgatgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagcc > 1:462851‑M1/1‑10 (MQ=255) tgatgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagcc > 1:5285191‑M1/1‑10 (MQ=255) cagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCa > 1:2924079‑M2/8‑51 (MQ=255) gatgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagccc < 1:1401569‑M1/51‑43 (MQ=255) agtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCAc > 1:3990362‑M2/7‑51 (MQ=255) tgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagcccct > 1:6287252‑M1/1‑7 (MQ=255) tacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACtt < 1:6786162‑M2/47‑1 (MQ=255) tacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACtt > 1:1741907‑M2/5‑51 (MQ=255) gCAGTTtgtactgcacccattttgttggacgatgaaatggaatagccccta > 1:4123191‑M1/1‑6 (MQ=255) gCAGTTtgtactgcacccattttgttggacgatgaaatggaatagccccta > 1:5865109‑M1/1‑6 (MQ=255) caGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGc > 1:241681‑M2/3‑51 (MQ=255) caGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGc < 1:3514627‑M2/49‑1 (MQ=255) cAGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaa < 1:6099884‑M1/51‑47 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat < 1:322177‑M1/51‑48 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat < 1:2076392‑M1/51‑48 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat > 1:721324‑M1/1‑4 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat < 1:2781490‑M1/51‑48 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat < 1:3682308‑M1/51‑48 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat < 1:2624952‑M1/51‑48 (MQ=255) gTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTg < 1:3397414/51‑1 (MQ=255) gTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTg > 1:6353537/1‑51 (MQ=255) gTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTg < 1:3056940/51‑1 (MQ=255) ttCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGa > 1:2539798/1‑51 (MQ=255) ttCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGa > 1:640764/1‑51 (MQ=255) ttCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGa < 1:6568734/51‑1 (MQ=255) tCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGAt > 1:494364/1‑51 (MQ=255) tCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGAt > 1:1070375/1‑51 (MQ=255) | GGTCCAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGAT > REL606/929526‑929626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |