| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 664688 = | NA (NA) | 73 (0.920) | 50/100 | 0.3 | NA | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 2086597 | NA (NA) | intergenic (‑1018/‑527) | yegL/yegM | hypothetical protein/multidrug efflux system, subunit A | |||||
CCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > REL606/664639‑664734 | ccGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTg < 1:5894621/51‑1 (MQ=255) cGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGt > 1:30512/1‑51 (MQ=255) cGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGt > 1:1346673/1‑51 (MQ=255) aaaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt < 1:2689720/51‑1 (MQ=255) aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg > 1:5930927/1‑51 (MQ=255) aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg > 1:3179947/1‑51 (MQ=255) aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg > 1:2362944/1‑51 (MQ=255) aCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc > 1:7248628/1‑51 (MQ=255) cTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa < 1:4612627/51‑1 (MQ=255) cTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa > 1:5809229/1‑51 (MQ=255) ttATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAc > 1:6919833/1‑51 (MQ=255) ttATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAc < 1:2102440/51‑1 (MQ=255) tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc < 1:260355/51‑1 (MQ=255) tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc < 1:534665/51‑1 (MQ=255) aTTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAccc > 1:7103643/1‑51 (MQ=255) aTTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAccc < 1:6636583/51‑1 (MQ=255) ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa > 1:491474/1‑51 (MQ=255) ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa > 1:6417056/1‑51 (MQ=255) ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa > 1:6033390/1‑51 (MQ=255) tGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAt < 1:3137553/51‑1 (MQ=255) tGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAt > 1:1656533/1‑51 (MQ=255) ggCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtt < 1:6073404/51‑1 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAttt < 1:841024/51‑1 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAttt < 1:5156819/51‑1 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt < 1:4335551/51‑1 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt < 1:1794736/51‑1 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt < 1:1458593/51‑1 (MQ=255) gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg > 1:2629645/1‑51 (MQ=255) gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg < 1:2302418/51‑1 (MQ=255) tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgt < 1:4858215/51‑1 (MQ=255) tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgt < 1:2862066/51‑1 (MQ=255) gAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgtt > 1:5103463/1‑51 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgttg < 1:2015750/51‑1 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCCCCCATTTTGTTGGa < 1:6787169/51‑1 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa > 1:854482/1‑51 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa < 1:1472421/51‑1 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa < 1:1724280/51‑1 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc > 1:1137852/1‑51 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc > 1:1576582/1‑51 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc < 1:3176720/51‑1 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc > 1:5020569/1‑51 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt > 1:3989889/1‑51 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt > 1:5340184/1‑51 (MQ=255) aGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATg < 1:3388397/51‑1 (MQ=255) aGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATg < 1:4953629/51‑1 (MQ=255) gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:6745744/51‑1 (MQ=255) gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:2905413/51‑1 (MQ=255) gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:5832387/51‑1 (MQ=255) cccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaa < 1:3545827/51‑1 (MQ=255) cccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaa < 1:4940975/51‑1 (MQ=255) cccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaa < 1:6218250/51‑1 (MQ=255) ccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:3438690/1‑51 (MQ=255) cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATg < 1:378030/47‑1 (MQ=255) cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:4447727/51‑1 (MQ=255) gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:88017/51‑1 (MQ=255) gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:6055303/51‑1 (MQ=255) gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:3893940/51‑1 (MQ=255) gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:5565310/51‑1 (MQ=255) acacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATgg < 1:6505489/51‑1 (MQ=255) cacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGa < 1:140006/51‑1 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa < 1:3956749/51‑1 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa > 1:2429815/1‑51 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt > 1:4199457/1‑51 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:211750/51‑1 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt > 1:228421/1‑51 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt > 1:4671489/1‑51 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:3440521/51‑1 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:6104209/51‑1 (MQ=255) gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2931479/51‑1 (MQ=255) gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:3790771/51‑1 (MQ=255) gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:776376/51‑1 (MQ=255) gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:162846/51‑1 (MQ=255) cagcagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc < 1:6053230/51‑1 (MQ=255) agcagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:4207797/1‑51 (MQ=255) cagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa < 1:5801812/51‑1 (MQ=40) cagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa > 1:5975618/1‑51 (MQ=40) cagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa < 1:3734207/51‑1 (MQ=40) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:2464478/51‑1 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:3259370/51‑1 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:4796390/51‑1 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 1:4159412/1‑51 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 1:846150/1‑51 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 1:4822649/1‑51 (MQ=38) gTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat > 1:6261556/1‑51 (MQ=35) | CCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > REL606/664639‑664734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |