| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 664688 = | NA (NA) | 73 (0.920) | 50/100 | 0.3 | NA | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 2086597 | NA (NA) | intergenic (‑1018/‑527) | yegL/yegM | hypothetical protein/multidrug efflux system, subunit A | |||||
TTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGTTTCC > REL606/2086557‑2086647 | tttCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCt > 1:1309584/1‑51 (MQ=33)tttCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCt > 1:4818133/1‑51 (MQ=33)tttCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCt > 1:2980079/1‑51 (MQ=33)tttCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCt > 1:3484818/1‑51 (MQ=33) ttCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTg > 1:5522768/1‑51 (MQ=35) tCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGa > 1:1210543/1‑51 (MQ=38) tCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGa < 1:2051660/51‑1 (MQ=38) cccGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGaa > 1:4975693/1‑51 (MQ=35) cccGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGaa < 1:5224638/51‑1 (MQ=35) cccGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGaa < 1:1398388/51‑1 (MQ=35) ccGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAAt < 1:5040825/51‑1 (MQ=35) ccGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAAt > 1:3125843/1‑51 (MQ=35) cGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAAtt < 1:5717390/51‑1 (MQ=38) cGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAAtt < 1:6681191/51‑1 (MQ=38) cGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAAtt > 1:6392427/1‑51 (MQ=38) tttCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCa < 1:914116/51‑1 (MQ=255) ttCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAg > 1:4476147/1‑51 (MQ=255) ttCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAg > 1:5189833/1‑51 (MQ=255) tCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGt > 1:4727171/1‑51 (MQ=40) cAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTc > 1:5504209/1‑51 (MQ=38) cAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTc < 1:2705372/51‑1 (MQ=38) cAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTc < 1:1615881/51‑1 (MQ=38) cAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTc < 1:6866919/51‑1 (MQ=38) cGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGGATTCAGTCTAt < 1:318155/51‑1 (MQ=255) cGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTAt < 1:5982056/51‑1 (MQ=35) gTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATc > 1:2295493/1‑51 (MQ=38) tCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCg < 1:231674/51‑1 (MQ=35) tCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCg < 1:231678/51‑1 (MQ=35) tCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCg < 1:3451225/51‑1 (MQ=35) cccGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGc < 1:2479460/51‑1 (MQ=35) cccGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGc > 1:6932226/1‑51 (MQ=35) ccGCTGAAATCGTCGGCTTGCCTCCTTTCGCCCTGAATTCAGTCTATc < 1:5569161/48‑1 (MQ=255) ccGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCt < 1:4679486/51‑1 (MQ=35) cGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTa < 1:3884726/51‑1 (MQ=40) cGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTa < 1:4025448/51‑1 (MQ=40) cGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTa < 1:4796983/51‑1 (MQ=38) cGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTa < 1:2506636/51‑1 (MQ=40) gCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTaa > 1:3535070/1‑51 (MQ=40) cTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAAc > 1:2776130/1‑51 (MQ=255) tGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAAcg < 1:6428072/51‑1 (MQ=255) tGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAAcg < 1:1385018/51‑1 (MQ=255) aaaTCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAAcgcg > 1:6315382/1‑51 (MQ=255) aaTCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGt < 1:1944540/51‑1 (MQ=255) aTCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTg < 1:3336570/51‑1 (MQ=255) cgtcgGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGaa < 1:5484608/51‑1 (MQ=255) gtcgGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAAc < 1:98532/51‑1 (MQ=255) tcgGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACa > 1:1903622/1‑51 (MQ=255) tcgGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACa > 1:225259/1‑51 (MQ=255) cgGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACaa < 1:4365838/51‑1 (MQ=255) cgGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACaa > 1:3899907/1‑51 (MQ=255) ggCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACaaa < 1:6282427/51‑1 (MQ=255) ggCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACaaa > 1:6748949/1‑51 (MQ=255) ggCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACaaa < 1:1384471/51‑1 (MQ=255) gCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACaaaa > 1:5680047/1‑51 (MQ=255) gCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACaaaa < 1:847444/51‑1 (MQ=255) cTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAAt > 1:6090127/1‑51 (MQ=255) ttACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATa > 1:1537554/1‑51 (MQ=255) ttACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATa < 1:618025/51‑1 (MQ=255) ttACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATa < 1:2608468/51‑1 (MQ=255) tACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAg > 1:2630411/1‑51 (MQ=255) tACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAg > 1:5972294/1‑51 (MQ=255) tACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAg > 1:2605260/1‑51 (MQ=255) tACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAg < 1:5176983/51‑1 (MQ=255) tACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAg > 1:4108814/1‑51 (MQ=255) aCCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGt > 1:6322405/1‑51 (MQ=255) cctcctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACaaa < 1:5106399/45‑1 (MQ=255) cctcctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGtt < 1:3754066/51‑1 (MQ=255) cctcctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGtt < 1:897455/51‑1 (MQ=255) cctcctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGtt < 1:3895113/51‑1 (MQ=255) ctcctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGttt < 1:6233930/51‑1 (MQ=255) ctcctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGttt < 1:1622539/51‑1 (MQ=255) ctcctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGttt > 1:430679/1‑51 (MQ=255) tcctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGTTTc < 1:2827128/51‑1 (MQ=255) tcctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGTTTc < 1:5945513/51‑1 (MQ=255) cctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGTTTcc > 1:7082770/1‑51 (MQ=255) cctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGTTTcc < 1:6629490/51‑1 (MQ=255) cctTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGTTTcc < 1:3417306/51‑1 (MQ=255) | TTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCCTGAATTCAGTCTATCGCTAACGCGTGAACAAAATAGTTTCC > REL606/2086557‑2086647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |