| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 664688 = | NA (NA) | 73 (0.920) | 50/100 | 0.3 | NA | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 2086597 | NA (NA) | intergenic (‑1018/‑527) | yegL/yegM | hypothetical protein/multidrug efflux system, subunit A | |||||
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664733‑664688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC < REL606/2086597‑2086548 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGT > 1:6116644/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTA > 1:5666235/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTA < 1:782521/51‑1 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTA < 1:1222830/51‑1 AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAA < 1:349138/51‑1 GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAG < 1:455261/51‑1 GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGC < 1:4975743/51‑1 GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGC < 1:115978/51‑1 GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCC > 1:1545187/1‑51 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCG < 1:6023684/51‑1 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCG < 1:4919254/51‑1 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCG < 1:1888961/51‑1 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGA > 1:698495/1‑51 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGA > 1:5644598/1‑51 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGA > 1:1867388/1‑51 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGA < 1:1802411/51‑1 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGAC > 1:976623/1‑51 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGAC > 1:6882115/1‑51 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGAC > 1:5974287/1‑51 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG < 1:3394058/51‑1 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG > 1:2174318/1‑51 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG > 1:7080292/1‑51 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG < 1:4480637/51‑1 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGAT < 1:789650/51‑1 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG > 1:5190929/1‑47 ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTC < 1:3263434/51‑1 ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTC < 1:4014038/51‑1 ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTC > 1:2082346/1‑51 TTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCA > 1:3224567/1‑51 TTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAG > 1:4926010/1‑51 TTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAG > 1:807052/1‑51 TTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAG > 1:3971534/1‑51 TCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGC < 1:2705860/51‑1 TCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGC > 1:5078518/1‑51 TCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGC > 1:5432348/1‑51 CATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCG > 1:792575/1‑51 CATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCG < 1:2926634/51‑1 ATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGG < 1:4785851/51‑1 ATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGG < 1:5570785/51‑1 TCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGG < 1:7276914/51‑1 CGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGA > 1:7093545/1‑51 CGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGA < 1:5468957/51‑1 TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACG > 1:5539726/1‑51 TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACG > 1:4472533/1‑51 TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACG < 1:148751/51‑1 TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACG < 1:4156470/51‑1 CCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGC > 1:4249343/1‑51 CAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCT < 1:6144570/51‑1 AACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTG < 1:6991622/51‑1 ACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGA < 1:6632435/51‑1 AAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAA > 1:5848273/1‑51 AAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAA > 1:3049359/1‑51 AAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAAC < 1:5228620/51‑1 AATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACG > 1:381188/1‑51 ATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGG > 1:7074710/1‑51 TGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGG > 1:1393490/1‑51 TGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGG < 1:1203845/51‑1 TGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAG > 1:3126952/1‑51 GCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGC < 1:6860313/51‑1 CAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCC > 1:1182544/1‑51 AGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCC > 1:1126205/1‑51 GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCC > 1:6578262/1‑51 TACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCT < 1:2185260/51‑1 ACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTC < 1:4772082/51‑1 ACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTC > 1:3076249/1‑51 ACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTC > 1:1937282/1‑51 CAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCC > 1:3645374/1‑51 AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC > 1:703219/1‑51 AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC > 1:6749221/1‑51 AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC < 1:5113709/51‑1 AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC > 1:2137280/1‑51 AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC > 1:3607937/1‑51 AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAA > 1:3081355/1‑42 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664733‑664688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC < REL606/2086597‑2086548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |