| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 4,275,717 | 57510 bp→GTACA | 100% | [yjcO]–[lysU] | 52 genes [yjcO], fdhF, yjcP, yjcQ, yjcR, yjcS, alsK, alsE, alsC, alsA, alsB, rpiR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, phnC, phnB, phnA, yjdA, yjcZ, proP, basS, basR, yjdB, yjdE, adiY, adiA, melR, melA, melB, yjdF, fumB, dcuB, dcuR, dcuS, dcuS, yjdI, yjdJ, yjdK, [lysU] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4275717 | 4333226 | 57510 | 40 [0] | [0] 40 | [yjcO]–[lysU] | [yjcO],fdhF,yjcP,yjcQ,yjcR,yjcS,alsK,alsE,alsC,alsA,alsB,rpiR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,phnC,phnB,phnA,yjdA,yjcZ,proP,basS,basR,yjdB,yjdE,adiY,adiA,melR,melA,melB,yjdF,fumB,dcuB,dcuR,dcuS,dcuS,yjdI,yjdJ,yjdK,[lysU] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4275716 | 0 (0.000) | 34 (1.320) +GTACA |
21/268 | NT | 100% | coding (232/690 nt) | yjcO | hypothetical protein |
| ? | REL606 | 4333227 = | 0 (0.000) | coding (211/1518 nt) | lysU | lysine tRNA synthetase, inducible | |||||
ACCCAGATCCCATTTTTTAAACTGATCGTTATAAACACCTTCTGGCAGGCTATCTCGTGCAACGTACAGTTGAATACGGCCACCGACATCCTGCAACGTTACAAAGGAGGCTTTCCCCATGATACGACGGGTCATCATTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCG > REL606/4333081‑4333371 | ctttggataatccggtttacccgcttgagtatttaccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaataacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAAc < 1:194333‑M2/4‑1 (MQ=255)ctttggataatccggtttacccgcttgagtatttaccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAAc < 2:569425‑M2/4‑1 (MQ=255) ttggataatccggtttacccgcttgagtatttaccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCg < 2:588390‑M2/6‑1 (MQ=255) gataatccggtttacccgcttgcgtatttaccagaatatgcgccagcgttacttccccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCgaga < 1:641002‑M2/9‑1 (MQ=255) ataatccggtttacccgcttgagtatttaccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGAc < 2:90191‑M2/10‑1 (MQ=255) taatccggtttacccgcttgagtatttaccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACt < 2:268180‑M2/11‑1 (MQ=255) ggtttacccgcttgagtatttaccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATg > 1:290239‑M2/134‑150 (MQ=255) gtttacccgcttgagtatttaccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaactttttcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGt < 1:654994‑M2/18‑1 (MQ=255) ccgcttgagtatttaccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAgg < 2:291066‑M2/24‑1 (MQ=255) cgcttgagtatttaccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGa < 2:527441‑M2/25‑1 (MQ=255) ccagaatatgcgccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGt > 2:384050‑M2/112‑150 (MQ=255) atctgcgccagcgttacttcactttctttattacccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCAAAACTTCCATGTTTAAGGATTCCAGTTCCTAGTTATcc > 1:566914‑M2/107‑150 (MQ=255) tacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAActc < 1:111748‑M2/58‑1 (MQ=255) tcttttctgcccgctggtgtcgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAAc < 1:88755‑M2/68‑1 (MQ=255) tctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTTCAAc > 1:95053‑M2/83‑150 (MQ=255) tctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAAc < 2:634576‑M2/68‑1 (MQ=255) ccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAgg < 2:676475‑M2/78‑1 (MQ=255) ccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAgg < 1:382935‑M2/78‑1 (MQ=255) ccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAgg < 2:64540‑M2/78‑1 (MQ=255) acttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGa > 2:547821‑M2/47‑150 (MQ=255) gtggatggtccgtactgaccggattggttatgtacaCAACCGAGACTTGAATGTTTAAGGCTTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCacac < 1:144846‑M2/114‑1 (MQ=255) tggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAATGCCACAcc < 1:546237‑M2/115‑1 (MQ=255) tggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACAcc < 1:315992‑M2/115‑1 (MQ=255) tggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACAcc < 1:151036‑M2/115‑1 (MQ=255) gacagagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACAcc < 2:7886‑M2/115‑1 (MQ=255) agtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGccacaccctgtc > 1:7857‑M2/31‑145 (MQ=255) agtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCt < 2:178463‑M2/120‑1 (MQ=255) agtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCt > 2:683731‑M2/31‑150 (MQ=255) agtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCt > 1:325868‑M2/31‑150 (MQ=255) gtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTg > 2:589275‑M2/30‑150 (MQ=255) gtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTg > 1:531323‑M2/30‑150 (MQ=255) gtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTg > 2:655812‑M2/30‑150 (MQ=255) gtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGCTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTg > 2:660969‑M2/30‑150 (MQ=255) atccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTg > 2:77190‑M2/30‑150 (MQ=255) agactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGt < 1:587542‑M2/125‑1 (MQ=255) gattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCAAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTAAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGATGACGTAGTGCCGCCa > 1:232819‑M2/16‑150 (MQ=255) gtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGtttt > 2:145217‑M2/11‑150 (MQ=255) gatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTc > 2:525379‑M2/9‑150 (MQ=255) gatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTc > 1:406167‑M2/9‑150 (MQ=255) gtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTcgcg > 2:452660‑M2/6‑150 (MQ=255) | ACCCAGATCCCATTTTTTAAACTGATCGTTATAAACACCTTCTGGCAGGCTATCTCGTGCAACGTACAGTTGAATACGGCCACCGACATCCTGCAACGTTACAAAGGAGGCTTTCCCCATGATACGACGGGTCATCATTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCG > REL606/4333081‑4333371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |