| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 4,275,717 | 57510 bp→GTACA | 100% | [yjcO]–[lysU] | 52 genes [yjcO], fdhF, yjcP, yjcQ, yjcR, yjcS, alsK, alsE, alsC, alsA, alsB, rpiR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, phnC, phnB, phnA, yjdA, yjcZ, proP, basS, basR, yjdB, yjdE, adiY, adiA, melR, melA, melB, yjdF, fumB, dcuB, dcuR, dcuS, dcuS, yjdI, yjdJ, yjdK, [lysU] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4275717 | 4333226 | 57510 | 40 [0] | [0] 40 | [yjcO]–[lysU] | [yjcO],fdhF,yjcP,yjcQ,yjcR,yjcS,alsK,alsE,alsC,alsA,alsB,rpiR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,phnC,phnB,phnA,yjdA,yjcZ,proP,basS,basR,yjdB,yjdE,adiY,adiA,melR,melA,melB,yjdF,fumB,dcuB,dcuR,dcuS,dcuS,yjdI,yjdJ,yjdK,[lysU] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4275716 | 0 (0.000) | 34 (1.320) +GTACA |
21/268 | NT | 100% | coding (232/690 nt) | yjcO | hypothetical protein |
| ? | REL606 | 4333227 = | 0 (0.000) | coding (211/1518 nt) | lysU | lysine tRNA synthetase, inducible | |||||
ATTGCCTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAACCAGCTGTCGGCAAGAAAATATTGTGCGCGTCGGTCCCCGGCCTCTGCTGC > REL606/4275571‑4275863 | aTTGCCTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTGCTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTACAGACTGACCGGATTGGTGATgtac < 1:74874‑M1/150‑5 (MQ=255) cTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAATAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaac < 1:194333‑M1/150‑10 (MQ=255) cTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaac < 2:569425‑M1/150‑10 (MQ=255) ttGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccg < 2:588390‑M1/150‑12 (MQ=255) gATAATCCGGTTTACCCGCTTGCGTATTTACCAGAATATGCGCCAGCGTTACTTCCCCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgaga < 1:641002‑M1/150‑15 (MQ=255) aTAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagac < 2:90191‑M1/150‑16 (MQ=255) tAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagact < 2:268180‑M1/150‑17 (MQ=255) ggTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatg > 1:290239‑M1/1‑128 (MQ=255) gTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTTCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgt < 1:654994‑M1/150‑24 (MQ=255) ccGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaagg < 2:291066‑M1/150‑30 (MQ=255) cGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaagga < 2:527441‑M1/150‑31 (MQ=255) ccAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggt > 2:384050‑M1/1‑106 (MQ=255) atctgcgCCAGCGTTACTTCACTTTCTTTATTACCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccaaaacttccatgtttaaggattccagttcctagttatcc > 1:566914‑M1/4‑101 (MQ=255) tACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactc < 1:111748‑M1/150‑64 (MQ=255) tcttTTCTGCCCGCTGGTGTCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaac < 1:88755‑M1/150‑74 (MQ=255) tcttTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgttcaac > 1:95053‑M1/1‑77 (MQ=255) tcttTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaac < 2:634576‑M1/150‑74 (MQ=255) ccGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagagg < 2:64540‑M1/150‑84 (MQ=255) ccGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagagg < 1:382935‑M1/150‑84 (MQ=255) ccGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagagg < 2:676475‑M1/150‑84 (MQ=255) aCTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattggga > 2:547821‑M1/1‑41 (MQ=255) gtgGATGGTCCGTACTGACCGGATTGGTTATgtacacaaccgagacttgaatgtttaaggcttccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacac < 1:144846‑M1/150‑120 (MQ=255) tgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaatgccacacc < 1:546237‑M1/150‑121 (MQ=255) tgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacacc < 1:315992‑M1/150‑121 (MQ=255) tgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacacc < 1:151036‑M1/150‑121 (MQ=255) gacagagtccaGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacacc < 2:7886‑M1/145‑121 (MQ=255) aGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgct > 1:325868‑M1/1‑25 (MQ=255) aGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgct > 2:683731‑M1/1‑25 (MQ=255) aGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgct < 2:178463‑M1/150‑126 (MQ=255) aGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccctgtc > 1:7857‑M1/1‑25 (MQ=255) gTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgctg > 2:589275‑M1/1‑24 (MQ=255) gTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgctg > 1:531323‑M1/1‑24 (MQ=255) gTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgctg > 2:655812‑M1/1‑24 (MQ=255) gTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagctcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgctg > 2:660969‑M1/1‑24 (MQ=255) atcCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgctg > 2:77190‑M1/2‑24 (MQ=255) aGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgctgacgt < 1:587542‑M1/150‑131 (MQ=255) gATTGGTGATgtacacaaccgagacttcaatgtttaaggattcaagttcctggttatccttcgcatcaaactcttcgtgcaactgctaagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgatgacgtagtgccgcca > 1:232819‑M1/1‑10 (MQ=255) gTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgctgacgtagtgccgccagtttt > 2:145217‑M1/1‑5 (MQ=255) gATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgctgacgtagtgccgccagtttttc > 2:525379‑M1/1‑3 (MQ=255) gATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatccttcgcatcaaactcttcgtgcaactgctcagaggtatggtcgcggcgaaaatcattgggaaacgccacaccttgctgacgtagtgccgccagtttttc > 1:406167‑M1/1‑3 (MQ=255) | ATTGCCTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAACCAGCTGTCGGCAAGAAAATATTGTGCGCGTCGGTCCCCGGCCTCTGCTGC > REL606/4275571‑4275863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |