| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 2,034,358 | Δ19,491 bp | 100% | [insB‑14]–[wcaJ] | 20 genes [insB‑14], insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2034358–2035096 | 2053848 | 18753–19491 | 22 [0] | [0] 22 | [insB‑14]–[wcaJ] | [insB‑14],insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2034357 | 0 (0.000) | 18 (0.670) | 16/278 | NT | 100% | noncoding (737/768 nt) | IS1 | repeat region |
| ? | REL606 | 2053849 = | 0 (0.000) | coding (823/1395 nt) | wcaJ | predicted UDP‑glucose lipid carrier transferase | |||||
GTACCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGC > REL606/2034209‑2034506 | gTACCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAg < 2:92472‑M1/150‑2 (MQ=255) aCCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtt < 2:442956‑M1/150‑4 (MQ=255) aCCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtt < 2:243884‑M1/150‑4 (MQ=255) acTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCAAGACAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggt > 1:417331‑M1/1‑135 (MQ=255) atatAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaacc > 2:186321‑M1/1‑130 (MQ=255) atatAAACTGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATCTATCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaacc < 1:177379‑M1/150‑21 (MQ=255) cGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaa < 2:487071‑M1/150‑28 (MQ=255) aaTAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcg > 1:137990‑M1/1‑120 (MQ=255) tAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTATAACAAATATCCGGTAATGACTACAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggcaagcggc > 1:352365‑M1/1‑118 (MQ=255) aGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatac < 2:372319‑M1/150‑42 (MQ=255) aGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatac < 1:56709‑M1/150‑42 (MQ=255) cTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacag < 1:353495‑M1/150‑44 (MQ=255) tttATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatc < 1:125018‑M1/150‑69 (MQ=255) tatatatataGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctc < 2:550672‑M1/150‑71 (MQ=255) gTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaaggttgaaggtaaa > 1:557197‑M1/1‑47 (MQ=255) tAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttgaaggtaaagac < 1:358765‑M1/150‑107 (MQ=255) gacagaatatccGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttgaaggtaaagac < 1:526508‑M1/145‑107 (MQ=255) aaTATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttgaaggtaaagacctgtc > 2:528024‑M1/1‑39 (MQ=255) atCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagtggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttgaaggtaaagacatcgggga < 2:394828‑M1/150‑115 (MQ=255) gTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttgaaggtaaagacatcggggatcagc < 2:138384‑M1/150‑120 (MQ=255) gACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttgaaggtaaagacatcggggaacagcagcac < 2:461904‑M1/150‑125 (MQ=255) agtttgcgcaggaggttaaccccggaacgctgcgtgtcatacagcggcaccaccggtacgccattcatctcttggaggcgtgaatggagaatgtggaaggtaaagacatcggggatcagcagcaccgcacaggtggtctccgccatttta > 1:302942‑M1/1‑1 (MQ=255) | GTACCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGC > REL606/2034209‑2034506 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |