| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 2,034,358 | Δ19,491 bp | 100% | [insB‑14]–[wcaJ] | 20 genes [insB‑14], insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2034358–2035096 | 2053848 | 18753–19491 | 22 [0] | [0] 22 | [insB‑14]–[wcaJ] | [insB‑14],insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2034357 | 0 (0.000) | 18 (0.670) | 16/278 | NT | 100% | noncoding (737/768 nt) | IS1 | repeat region |
| ? | REL606 | 2053849 = | 0 (0.000) | coding (823/1395 nt) | wcaJ | predicted UDP‑glucose lipid carrier transferase | |||||
CACTTTGATCGGTTTGCCATCCATGCCGTAGCGAGTCTGGCGGAAAATAACCGGCCCCGGTGAGCTCAGTTTCACCGCCAGCGCAATGCAGCACAGCACCGGGGAGATCAGCAGCAGGATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGATCAGCAGCACCGAACAGGTGGTGTCCGCCAGTTGA > REL606/2053700‑2053997 | gtaccattaccaccacttaatataaccggaataagaggtgagctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttag < 2:92472‑M2/1‑1 (MQ=255) accattaccaccacttaatataaccggaataagaggtgagctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGtt < 2:442956‑M2/3‑1 (MQ=255) accattaccaccacttaatataaccggaataagaggtgagctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGtt < 2:243884‑M2/3‑1 (MQ=255) acttaatataaccggaataagaggtgagctcataaaaatctcctgataacttttttatatatatagccaagacaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGt > 1:417331‑M2/136‑150 (MQ=255) atataaccggaataagaggtgagctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAAcc > 2:186321‑M2/131‑150 (MQ=255) atataaactgaataagaggtgagctcataaaaatctcctgataacttttttatatatctatccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAAcc < 1:177379‑M2/20‑1 (MQ=255) cggaataagaggtgagctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGaaa < 2:487071‑M2/27‑1 (MQ=255) aataagaggtgagctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcg > 1:137990‑M2/121‑150 (MQ=255) taagaggtgagctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtataacaaatatccggtaatgactacaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGCAAgcggc > 1:352365‑M2/119‑150 (MQ=255) agctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATAc < 2:372319‑M2/41‑1 (MQ=255) agctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATAc < 1:56709‑M2/41‑1 (MQ=255) ctcataaaaatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAg < 1:353495‑M2/43‑1 (MQ=255) tttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCAtc < 1:125018‑M2/68‑1 (MQ=255) tatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCAtctc < 2:550672‑M2/70‑1 (MQ=255) gtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAAGGTTGAAGGTaaa > 1:557197‑M2/48‑150 (MQ=255) taacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGAc < 1:358765‑M2/106‑1 (MQ=255) gacagaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGAc < 1:526508‑M2/106‑1 (MQ=255) aatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTaaagacctgtc > 2:528024‑M2/40‑145 (MQ=255) atccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGTGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGa < 2:394828‑M2/114‑1 (MQ=255) gtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGATcagc < 2:138384‑M2/119‑1 (MQ=255) gactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGAACAGCAGCAc < 2:461904‑M2/124‑1 (MQ=255) aGTTTGCGCAGGAGGTTAACCCCGGAACGCTGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTGGAGGCGTGAATGGAGAATGTGGAAGGTAAAGACATCGGGGATCAGCAGCACCGCACAGGTGGTCTCCGCcatttta > 1:302942‑M2/2‑148 (MQ=255) | CACTTTGATCGGTTTGCCATCCATGCCGTAGCGAGTCTGGCGGAAAATAACCGGCCCCGGTGAGCTCAGTTTCACCGCCAGCGCAATGCAGCACAGCACCGGGGAGATCAGCAGCAGGATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGATCAGCAGCACCGAACAGGTGGTGTCCGCCAGTTGA > REL606/2053700‑2053997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |