Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_007779	3,742,936	Δ1,336 bp		insD–insC	insD, insC

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007779	3742936–3744264	3744271	8–1336	37 [0]	[0] 37	insD–insC	insD,insC

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 3742935	0 (0.000)	34 (0.790)	27/184	0.6	100%	intergenic (‑123/+9)	yieE/insD	phosphopantetheinyl transferase/IS2 element protein
	?	NC_007779	3744272 =	0 (0.000)					intergenic (‑100/+21)	insC/yidZ	IS2 element protein/DNA‑binding transcriptional regulator

AAGAGTAATCATTTACTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATG  >  NC_007779/3742836‑3743033                                                                                                    |                                                                                                   aaGAGTAATCATTTACTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGg                                                                                                   >  1:764904‑M1/1‑100 (MQ=255)   gagTAATCATTTACTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtc                                                                                                 >  3:696044‑M1/1‑98 (MQ=255)                cTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGGAATTGGgtcgcgtttcatacga                                                                                    >  3:180641‑M1/1‑85 (MQ=255)                       gatgGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggtt                                                                             <  1:935445‑M1/101‑24 (MQ=255)                              aGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccat                                                                      <  1:606508‑M1/101‑31 (MQ=255)                                      gCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgt                                                              <  1:330200‑M1/101‑39 (MQ=255)                                       cGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgta                                                             <  3:440711‑M1/101‑40 (MQ=255)                                       cGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgta                                                             <  1:868530‑M1/101‑40 (MQ=255)                                       cGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtgtcatacgattcggttatgccatcgacgcgta                                                             <  1:1046118‑M1/101‑40 (MQ=255)                                        ggCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaa                                                            <  1:644619‑M1/101‑41 (MQ=255)                                        ggCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaa                                                            <  1:1198761‑M1/101‑41 (MQ=255)                                         gCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaa                                                           <  1:961718‑M1/101‑42 (MQ=255)                                             aaaGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtt                                                       <  3:732149‑M1/101‑46 (MQ=255)                                             aaaGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtt                                                       <  3:1288932‑M1/101‑46 (MQ=255)                                                gTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggttttt                                                    <  3:806102‑M1/101‑49 (MQ=255)                                                 ttCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggttttta                                                   <  3:208787‑M1/101‑50 (MQ=255)                                                   cGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaat                                                 >  1:428809‑M1/1‑50 (MQ=255)                                                       tCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtt                                             >  1:1435534‑M1/1‑46 (MQ=255)                                                         aGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttc                                           >  3:421064‑M1/1‑44 (MQ=255)                                                            cAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccg                                        >  2:38523‑M1/1‑41 (MQ=255)                                                                cTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaac                                    <  1:264520‑M1/101‑65 (MQ=255)                                                                cTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaac                                    >  1:385754‑M1/1‑37 (MQ=255)                                                                cTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaac                                    >  3:353108‑M1/1‑37 (MQ=255)                                                                 ttattaCAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaacc                                   >  1:29202‑M1/1‑36 (MQ=255)                                                                 ttattaCAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaacc                                   >  3:1519774‑M1/1‑36 (MQ=255)                                                                   attaCAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccag                                 <  1:165992‑M1/101‑68 (MQ=255)                                                                     taCAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagac                               <  3:908869‑M1/101‑70 (MQ=255)                                                                            tttttACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttc                        <  3:611624‑M1/101‑77 (MQ=255)                                                                              tttACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcgg                      >  3:1251946‑M1/1‑23 (MQ=255)                                                                               ttACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcgga                     >  1:190878‑M1/1‑22 (MQ=255)                                                                                      ttATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggc              <  1:1246578‑M1/101‑87 (MQ=255)                                                                                         ttGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgt           >  3:1026789‑M1/1‑12 (MQ=255)                                                                                          tttgaaATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgtt          >  3:421181‑M1/3‑11 (MQ=255)                                                                                          tgtgAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgtt          >  1:928942‑M1/1‑11 (MQ=255)                                                                                                 ttGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgttccgttta   <  3:611131‑M1/101‑98 (MQ=255)                                                                                                  tGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggttttttatggtttcccgtaaccagacgatcttcggattatggctgttccgtttat  >  1:601408‑M1/1‑3 (MQ=255)                                                                                                  tGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgttccgtttat  >  1:15915‑M1/1‑3 (MQ=255)                                                                                                    |                                                                                                   AAGAGTAATCATTTACTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATG  >  NC_007779/3742836‑3743033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑