Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_007779 | 3,742,936 | Δ1,336 bp | insD–insC | insD, insC |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_007779 | 3742936–3744264 | 3744271 | 8–1336 | 37 [0] | [0] 37 | insD–insC | insD,insC |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 3742935 | 0 (0.000) | 34 (0.790) | 27/184 | 0.6 | 100% | intergenic (‑123/+9) | yieE/insD | phosphopantetheinyl transferase/IS2 element protein |
? | NC_007779 | 3744272 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/DNA‑binding transcriptional regulator |
AAGAGTAATCATTTACTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATG > NC_007779/3742836‑3743033 | aaGAGTAATCATTTACTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGg > 1:764904‑M1/1‑100 (MQ=255) gagTAATCATTTACTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtc > 3:696044‑M1/1‑98 (MQ=255) cTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGGAATTGGgtcgcgtttcatacga > 3:180641‑M1/1‑85 (MQ=255) gatgGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggtt < 1:935445‑M1/101‑24 (MQ=255) aGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccat < 1:606508‑M1/101‑31 (MQ=255) gCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgt < 1:330200‑M1/101‑39 (MQ=255) cGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgta < 3:440711‑M1/101‑40 (MQ=255) cGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgta < 1:868530‑M1/101‑40 (MQ=255) cGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtgtcatacgattcggttatgccatcgacgcgta < 1:1046118‑M1/101‑40 (MQ=255) ggCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaa < 1:644619‑M1/101‑41 (MQ=255) ggCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaa < 1:1198761‑M1/101‑41 (MQ=255) gCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaa < 1:961718‑M1/101‑42 (MQ=255) aaaGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtt < 3:732149‑M1/101‑46 (MQ=255) aaaGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtt < 3:1288932‑M1/101‑46 (MQ=255) gTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggttttt < 3:806102‑M1/101‑49 (MQ=255) ttCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggttttta < 3:208787‑M1/101‑50 (MQ=255) cGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaat > 1:428809‑M1/1‑50 (MQ=255) tCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtt > 1:1435534‑M1/1‑46 (MQ=255) aGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttc > 3:421064‑M1/1‑44 (MQ=255) cAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccg > 2:38523‑M1/1‑41 (MQ=255) cTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaac < 1:264520‑M1/101‑65 (MQ=255) cTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaac > 1:385754‑M1/1‑37 (MQ=255) cTTATTACAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaac > 3:353108‑M1/1‑37 (MQ=255) ttattaCAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaacc > 1:29202‑M1/1‑36 (MQ=255) ttattaCAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaacc > 3:1519774‑M1/1‑36 (MQ=255) attaCAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccag < 1:165992‑M1/101‑68 (MQ=255) taCAACTTTTTTACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagac < 3:908869‑M1/101‑70 (MQ=255) tttttACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttc < 3:611624‑M1/101‑77 (MQ=255) tttACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcgg > 3:1251946‑M1/1‑23 (MQ=255) ttACATTTTATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcgga > 1:190878‑M1/1‑22 (MQ=255) ttATTGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggc < 1:1246578‑M1/101‑87 (MQ=255) ttGTGAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgt > 3:1026789‑M1/1‑12 (MQ=255) tttgaaATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgtt > 3:421181‑M1/3‑11 (MQ=255) tgtgAAATTGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgtt > 1:928942‑M1/1‑11 (MQ=255) ttGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgttccgttta < 3:611131‑M1/101‑98 (MQ=255) tGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggttttttatggtttcccgtaaccagacgatcttcggattatggctgttccgtttat > 1:601408‑M1/1‑3 (MQ=255) tGGgtcgcgtttcatacgattcggttatgccatcgacgcgtaaaggtttttaatggtttcccgtaaccagacgatcttcggattatggctgttccgtttat > 1:15915‑M1/1‑3 (MQ=255) | AAGAGTAATCATTTACTGGAATGATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATG > NC_007779/3742836‑3743033 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |