| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 3,742,936 | Δ1,336 bp | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 3742936–3744264 | 3744271 | 8–1336 | 37 [0] | [0] 37 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 3742935 | 0 (0.000) | 34 (0.790) | 27/184 | 0.6 | 100% | intergenic (‑123/+9) | yieE/insD | phosphopantetheinyl transferase/IS2 element protein |
| ? | NC_007779 | 3744272 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/DNA‑binding transcriptional regulator | |||||
TCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGTTCCGTTTAT > NC_007779/3744172‑3744369 | aagagtaatcatttactggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggg > 1:764904‑M2/101‑101 (MQ=255) gagtaatcatttactggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTc > 3:696044‑M2/99‑101 (MQ=255) ctggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtggaattggGTCGCGTTTCATACGa > 3:180641‑M2/86‑101 (MQ=255) gatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGtt < 1:935445‑M2/23‑1 (MQ=255) agactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCAt < 1:606508‑M2/30‑1 (MQ=255) gcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGt < 1:330200‑M2/38‑1 (MQ=255) cggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTa < 3:440711‑M2/39‑1 (MQ=255) cggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTa < 1:868530‑M2/39‑1 (MQ=255) cggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTGTCATACGATTCGGTTATGCCATCGACGCGTa < 1:1046118‑M2/39‑1 (MQ=255) ggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTaa < 1:644619‑M2/40‑1 (MQ=255) ggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTaa < 1:1198761‑M2/40‑1 (MQ=255) gctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTaaa < 1:961718‑M2/41‑1 (MQ=255) aaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGtt < 3:732149‑M2/45‑1 (MQ=255) aaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGtt < 3:1288932‑M2/45‑1 (MQ=255) gttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGttttt < 3:806102‑M2/48‑1 (MQ=255) ttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTa < 3:208787‑M2/49‑1 (MQ=255) cgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAt > 1:428809‑M2/51‑101 (MQ=255) tcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGtt > 1:1435534‑M2/47‑101 (MQ=255) agacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTc > 3:421064‑M2/45‑101 (MQ=255) caagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCg > 2:38523‑M2/42‑101 (MQ=255) cttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAc < 1:264520‑M2/64‑1 (MQ=255) cttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAc > 1:385754‑M2/38‑101 (MQ=255) cttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAc > 3:353108‑M2/38‑101 (MQ=255) ttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAcc > 1:29202‑M2/37‑101 (MQ=255) ttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAcc > 3:1519774‑M2/37‑101 (MQ=255) attacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAg < 1:165992‑M2/67‑1 (MQ=255) tacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGAc < 3:908869‑M2/69‑1 (MQ=255) tttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTc < 3:611624‑M2/76‑1 (MQ=255) tttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCgg > 3:1251946‑M2/24‑101 (MQ=255) ttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGa > 1:190878‑M2/23‑101 (MQ=255) ttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGc < 1:1246578‑M2/86‑1 (MQ=255) ttgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGt > 3:1026789‑M2/13‑101 (MQ=255) tttgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGtt > 3:421181‑M2/12‑101 (MQ=255) tgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGtt > 1:928942‑M2/12‑101 (MQ=255) ttggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGTTCCGTTTa < 3:611131‑M2/97‑1 (MQ=255) tggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTTATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGTTCCGTTTAt > 1:601408‑M2/4‑101 (MQ=255) tggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGTTCCGTTTAt > 1:15915‑M2/4‑101 (MQ=255) | TCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGTTCCGTTTAT > NC_007779/3744172‑3744369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |