Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_007779 | 3,539,230 | 3461 bp→CATATGTCGACTCTAGAGGATCCGCATGC | rhaB–[rhaD] | rhaB, rhaA, [rhaD] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_007779 | 3539230 | 3542690 | 3461 | 39 [0] | [0] 42 | rhaB–[rhaD] | rhaB,rhaA,[rhaD] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 3539229 | 0 (0.000) | 29 (0.880) +CATATGTCGACTCTAGAGGATCCGCATGC |
27/142 | 0.3 | 100% | intergenic (‑284/‑4) | rhaS/rhaB | DNA‑binding transcriptional activator/rhamnulokinase |
? | NC_007779 | 3542691 = | 0 (0.000) | coding (283/825 nt) | rhaD | rhamnulose‑1‑phosphate aldolase |
CTTTACTGGCAAATACACCGTTTATTGTCACCGGCTCGGGCAAATTCTTCCGTAACGTCCAGCTTGATCCTGCGGCTAACTTAGGCATCGTAAAAGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTGCGA > NC_007779/3542596‑3542788 | agtaacgagaaggtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGAc > 1:243775‑M2/96‑101 (MQ=255) taacgagaaggtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAg < 1:664120‑M2/8‑1 (MQ=255) taacgagaaggtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAg > 1:340311‑M2/94‑101 (MQ=255) acgagaaggtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCg < 3:846510‑M2/10‑1 (MQ=255) acgagaaggtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCg > 3:1024488‑M2/92‑101 (MQ=255) cgagaaggtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGa < 1:1290044‑M2/11‑1 (MQ=255) aaggtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGgc < 3:311085‑M2/15‑1 (MQ=255) aaggtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGgc < 3:862788‑M2/15‑1 (MQ=255) gtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGcgcg > 1:333412‑M2/84‑101 (MQ=255) gtcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGcgcg < 4:81404‑M2/18‑1 (MQ=255) tcgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCgg < 3:1328643‑M2/19‑1 (MQ=255) cgcgaattcaggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCggg > 3:87859‑M2/82‑101 (MQ=255) cgaattccggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCt > 4:148774‑M2/80‑101 (MQ=255) aggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACAt < 3:646724‑M2/29‑1 (MQ=255) ggcgctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgcctctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACAtt < 1:511797‑M2/30‑1 (MQ=255) gctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCtt < 1:50870‑M2/33‑1 (MQ=255) ctttttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCttt > 4:87528‑M2/68‑101 (MQ=255) tttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTggg > 3:1216190‑M2/65‑101 (MQ=255) tttagactggtcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTggg < 1:762662‑M2/37‑1 (MQ=255) gggcgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAAcc < 1:969894‑M2/45‑1 (MQ=255) cgtaatgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAAc < 1:872493‑M2/48‑1 (MQ=255) atgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAg < 3:1215943‑M2/52‑1 (MQ=255) tgaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGc < 1:979247‑M2/53‑1 (MQ=255) gaaattcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGcc < 1:175080‑M2/54‑1 (MQ=255) attcagcaggatcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTc < 1:1339680‑M2/57‑1 (MQ=255) atctccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCg < 1:71305‑M2/67‑1 (MQ=255) tcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGa > 3:1189526‑M2/34‑101 (MQ=255) tcaccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGa > 1:682477‑M2/34‑101 (MQ=255) caccatatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGaa > 1:751247‑M2/33‑101 (MQ=255) tatgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTcc > 1:434136‑M2/28‑101 (MQ=255) atgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCg < 1:253412‑M2/75‑1 (MQ=255) atgtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCg < 2:148902‑M2/75‑1 (MQ=255) gtcgactctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGc > 1:1195973‑M2/25‑101 (MQ=255) ctagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTc > 1:406627‑M2/18‑101 (MQ=255) tagaggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTcc > 3:1415589‑M2/17‑101 (MQ=255) aggatccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCttt < 1:1014741‑M2/88‑1 (MQ=255) ccgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCAc > 3:1263486‑M2/9‑101 (MQ=255) cgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACt > 3:1251201‑M2/8‑101 (MQ=255) cgcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACt < 3:1136060‑M2/94‑1 (MQ=255) gcatgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTg > 3:90438‑M2/7‑101 (MQ=255) catgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTGc < 1:110819‑M2/96‑1 (MQ=255) tgcGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTGCGa > 1:214304‑M2/4‑101 (MQ=255) | CTTTACTGGCAAATACACCGTTTATTGTCACCGGCTCGGGCAAATTCTTCCGTAACGTCCAGCTTGATCCTGCGGCTAACTTAGGCATCGTAAAAGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTGCGA > NC_007779/3542596‑3542788 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |