| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 3,539,230 | 3461 bp→CATATGTCGACTCTAGAGGATCCGCATGC | rhaB–[rhaD] | rhaB, rhaA, [rhaD] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 3539230 | 3542690 | 3461 | 39 [0] | [0] 42 | rhaB–[rhaD] | rhaB,rhaA,[rhaD] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 3539229 | 0 (0.000) | 29 (0.880) +CATATGTCGACTCTAGAGGATCCGCATGC |
27/142 | 0.3 | 100% | intergenic (‑284/‑4) | rhaS/rhaB | DNA‑binding transcriptional activator/rhamnulokinase |
| ? | NC_007779 | 3542691 = | 0 (0.000) | coding (283/825 nt) | rhaD | rhamnulose‑1‑phosphate aldolase | |||||
CCTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_007779/3539135‑3539229‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTGCGA > NC_007779/3542691‑3542788 ||||||||||||||||||||||||||||| CCTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATG < 1:1410389/101‑1CCTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATG > 3:955945/1‑101CCTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATG > 3:254821/1‑101 TGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTC < 1:1233743/101‑1 AATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAG > 3:881451/1‑101 ATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCG > 3:1353067/1‑101 TTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGC < 3:1081707/101‑1 TTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGC < 1:1065560/101‑1 CCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGC < 1:337412/101‑1 CCTGTCAGTAACGAGAAGGTCACGAATTCAGGCGCTTTTTAGACCGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCCCATGC < 3:730528/101‑1 AGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGAC > 1:243775/1‑101 TAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAG < 1:664120/101‑1 TAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAG > 1:340311/1‑101 ACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCG < 3:846510/101‑1 ACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCG > 3:1024488/1‑101 CGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGA < 1:1290044/101‑1 AAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGC < 3:311085/101‑1 AAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGC < 3:862788/101‑1 GTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCG < 4:81404/101‑1 GTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCG > 1:333412/1‑101 TCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGG < 3:1328643/101‑1 CGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGG > 3:87859/1‑101 CGAATTCCGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCT > 4:148774/1‑101 AGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACAT < 3:646724/101‑1 GGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGCCTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATT < 1:511797/101‑1 GCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTT < 1:50870/101‑1 CTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTT > 4:87528/1‑101 TTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGG < 1:762662/101‑1 TTTAGACTGGTCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGG > 3:1216190/1‑101 gggCGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACC < 1:969894/98‑1 CGTAATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAAC < 1:872493/101‑1 ATGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAG < 3:1215943/101‑1 TGAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGC < 1:979247/101‑1 GAAATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCC < 1:175080/101‑1 ATTCAGCAGGATCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTC < 1:1339680/101‑1 ATCTCCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCG < 1:71305/101‑1 TCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGA > 1:682477/1‑101 TCACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGA > 3:1189526/1‑101 CACCATATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAA > 1:751247/1‑101 TATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCC > 1:434136/1‑101 ATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCG < 2:148902/101‑1 ATGTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCG < 1:253412/101‑1 GTCGACTCTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGC > 1:1195973/1‑101 CTAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTC > 1:406627/1‑101 TAGAGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCC > 3:1415589/1‑101 AGGATCCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTT < 1:1014741/101‑1 CCGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCAC > 3:1263486/1‑101 CGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACT > 3:1251201/1‑101 CGCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACT < 3:1136060/101‑1 GCATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTG > 3:90438/1‑101 CATGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTGC < 1:110819/101‑1 TGCGTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTGCGA > 1:214304/1‑101 ||||||||||||||||||||||||||||| CCTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_007779/3539135‑3539229‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGACAGCGACGGCGCGGGCTACCACATTCTTTGGGGGTTAACCAACGAAGCCGTCCCCACTTCCGAACTTCCGGCTCACTTCCTTTCCCACTGCGA > NC_007779/3542691‑3542788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |