Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_007779 | 3,539,230 | 3461 bp→CATATGTCGACTCTAGAGGATCCGCATGC | rhaB–[rhaD] | rhaB, rhaA, [rhaD] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_007779 | 3539230 | 3542690 | 3461 | 39 [0] | [0] 42 | rhaB–[rhaD] | rhaB,rhaA,[rhaD] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 3539229 | 0 (0.000) | 29 (0.880) +CATATGTCGACTCTAGAGGATCCGCATGC |
27/142 | 0.3 | 100% | intergenic (‑284/‑4) | rhaS/rhaB | DNA‑binding transcriptional activator/rhamnulokinase |
? | NC_007779 | 3542691 = | 0 (0.000) | coding (283/825 nt) | rhaD | rhamnulose‑1‑phosphate aldolase |
CCTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACATTATGACCTTTCGCAATTGTGTCGCCGTCGATCTCGGCGCATCCAGTGGGCGCGTGATGCTGGCGCGTTACGAGCGTGAATGCCGCAGCCTGACGCT > NC_007779/3539135‑3539327 | ccTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatg > 3:955945‑M1/1‑95 (MQ=255) ccTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatg > 3:254821‑M1/1‑95 (MQ=255) ccTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatg < 1:1410389‑M1/101‑7 (MQ=255) tGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtc < 1:1233743‑M1/101‑9 (MQ=255) aaTGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctag > 3:881451‑M1/1‑85 (MQ=255) aTTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccg > 3:1353067‑M1/1‑77 (MQ=255) ttttCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgc < 1:1065560‑M1/101‑26 (MQ=255) ttttCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgc < 3:1081707‑M1/101‑26 (MQ=255) ccTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgc < 1:337412‑M1/101‑30 (MQ=255) ccTGTCAGTAACGAGAAGGTCACGAATTCAGGCGCTTTTTAGACCGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccccatgc < 3:730528‑M1/101‑30 (MQ=255) aGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgac > 1:243775‑M1/1‑66 (MQ=255) tAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacag < 1:664120‑M1/101‑38 (MQ=255) tAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacag > 1:340311‑M1/1‑64 (MQ=255) aCGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcg < 3:846510‑M1/101‑40 (MQ=255) aCGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcg > 3:1024488‑M1/1‑62 (MQ=255) cGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcga < 1:1290044‑M1/101‑41 (MQ=255) aaGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggc < 3:311085‑M1/101‑45 (MQ=255) aaGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggc < 3:862788‑M1/101‑45 (MQ=255) gTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcg > 1:333412‑M1/1‑54 (MQ=255) gTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcg < 4:81404‑M1/101‑48 (MQ=255) tCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgg < 3:1328643‑M1/101‑49 (MQ=255) cgcgAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcggg > 3:87859‑M1/1‑52 (MQ=255) cgAATTCCGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggct > 4:148774‑M1/1‑50 (MQ=255) aGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacat < 3:646724‑M1/101‑59 (MQ=255) ggCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgcctctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacatt < 1:511797‑M1/101‑60 (MQ=255) gcTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctt < 1:50870‑M1/101‑63 (MQ=255) cTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattcttt > 4:87528‑M1/1‑38 (MQ=255) tttAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttggg < 1:762662‑M1/101‑67 (MQ=255) tttAGACTGGTCGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttggg > 3:1216190‑M1/1‑35 (MQ=255) gggcgtaATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaacc < 1:969894‑M1/98‑75 (MQ=255) cGTAATGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaaccaac < 1:872493‑M1/101‑78 (MQ=255) aTGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaaccaacgaag < 3:1215943‑M1/101‑82 (MQ=255) tGAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaaccaacgaagc < 1:979247‑M1/101‑83 (MQ=255) gAAATTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaaccaacgaagcc < 1:175080‑M1/101‑84 (MQ=255) aTTCAGCAGGATCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaaccaacgaagccgtc < 1:1339680‑M1/101‑87 (MQ=255) aTCTCcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaaccaacgaagccgtccccacttccg < 1:71305‑M1/101‑97 (MQ=255) tCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaaccaacgaagccgtccccacttccga > 3:1189526‑M1/1‑4 (MQ=255) tCACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaaccaacgaagccgtccccacttccga > 1:682477‑M1/1‑4 (MQ=255) cACcatatgtcgactctagaggatccgcatgcgtcgacagcgacggcgcgggctaccacattctttgggggttaaccaacgaagccgtccccacttccgaa > 1:751247‑M1/1‑3 (MQ=255) | CCTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATGAAATTCAGCAGGATCACATTATGACCTTTCGCAATTGTGTCGCCGTCGATCTCGGCGCATCCAGTGGGCGCGTGATGCTGGCGCGTTACGAGCGTGAATGCCGCAGCCTGACGCT > NC_007779/3539135‑3539327 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |