Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_007779 | 2,320,795 | Δ1,336 bp | insD–insC | insD, insC |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_007779 | 2320795–2322125 | 2322130 | 6–1336 | 71 [0] | [0] 71 | insD–insC | insD,insC |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 2320794 | 0 (0.000) | 65 (1.490) | 55/188 | 0.0 | 100% | intergenic (+633/+11) | rcsB/insD | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein |
? | NC_007779 | 2322131 = | 0 (0.000) | intergenic (‑98/‑2582) | insC/atoS | IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC |
CATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCGGA > NC_007779/2322031‑2322231 | aaacgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtc > 1:370706‑M2/101‑101 (MQ=255) acgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGc < 1:1472288‑M2/3‑1 (MQ=255) acgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGc < 3:968808‑M2/3‑1 (MQ=255) cgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGct < 1:1414903‑M2/4‑1 (MQ=255) cgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGct > 3:734913‑M2/98‑101 (MQ=255) gccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGctc < 2:16904‑M2/5‑1 (MQ=255) gccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctcaccgctttgtccgttgacggcagagcgttagcaggatcgtCGctc > 1:586094‑M2/97‑101 (MQ=255) cggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCtctc > 3:1509499‑M2/95‑101 (MQ=255) cggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCtctc < 3:1360323‑M2/7‑1 (MQ=255) taatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCAtc < 1:599935‑M2/11‑1 (MQ=255) taatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCAtc > 3:1134639‑M2/91‑101 (MQ=255) atcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCAtctc < 1:366959‑M2/13‑1 (MQ=255) atcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCAtctc < 1:296074‑M2/13‑1 (MQ=255) ggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGAt > 3:462461‑M2/86‑101 (MQ=255) ggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGAt < 1:248617‑M2/16‑1 (MQ=255) gatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATc < 3:460342‑M2/17‑1 (MQ=255) atgatcatccacgaccagaatcatcatatcgtcattatcgctgtccgctttgtccgttgcccgcagagcgttagcaggatcgtCGCTCTCCAGCTCGATCa > 1:577093‑M2/84‑101 (MQ=255) atgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCa > 1:294125‑M2/84‑101 (MQ=255) tgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaa < 1:1227985‑M2/19‑1 (MQ=255) gatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaa < 1:1316027‑M2/20‑1 (MQ=255) atcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaat < 2:2356‑M2/21‑1 (MQ=255) tcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaata < 3:899052‑M2/22‑1 (MQ=255) catccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaataa > 3:922560‑M2/79‑101 (MQ=255) catccacgacaagaatcatcatatcggcattaacgctgaccgctttgtccgttgacggaagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaataa > 1:1311016‑M2/79‑101 (MQ=255) ccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAaataaata > 3:309964‑M2/76‑101 (MQ=255) ccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAaataaata > 1:339233‑M2/76‑101 (MQ=255) acgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATAcg < 4:8751‑M2/28‑1 (MQ=255) cagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCca < 1:47854‑M2/33‑1 (MQ=255) gaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCcaac < 1:1500848‑M2/35‑1 (MQ=255) aatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCcaaca < 2:121284‑M2/36‑1 (MQ=255) aatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCcaaca > 3:428592‑M2/66‑101 (MQ=255) atcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCcaacaa < 3:516524‑M2/37‑1 (MQ=255) tcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAAt > 3:1163873‑M2/64‑101 (MQ=255) catcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATg > 3:1112518‑M2/63‑101 (MQ=255) catcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATg > 3:843928‑M2/63‑101 (MQ=255) atcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGc > 1:493754‑M2/62‑101 (MQ=255) atcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGc > 1:355364‑M2/62‑101 (MQ=255) cgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGc > 3:62480‑M2/55‑101 (MQ=255) gtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCt < 1:1570513‑M2/48‑1 (MQ=255) cattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCa > 3:415360‑M2/52‑101 (MQ=255) attatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCCCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCAt < 1:944313‑M2/51‑1 (MQ=255) ttatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATg > 3:1031399‑M2/50‑101 (MQ=255) ttatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATg < 3:102222‑M2/52‑1 (MQ=255) ttatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATg < 1:1406095‑M2/52‑1 (MQ=255) atcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCg > 3:1232463‑M2/48‑101 (MQ=255) tcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCgg < 3:418852‑M2/55‑1 (MQ=255) tgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGagca > 3:971448‑M2/43‑101 (MQ=255) cgctttgtccgttgccggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCca > 4:82849‑M2/39‑101 (MQ=255) gctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCcac > 1:643573‑M2/38‑101 (MQ=255) ctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCACCTCGATCAAATAAATACGCGCCAAAAATGCCGGTAGCTCATGCGGCGCAGCcaca < 1:1255000‑M2/65‑1 (MQ=255) tgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACtg < 4:4085‑M2/68‑1 (MQ=255) gtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATCCGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACtgt < 3:991317‑M2/69‑1 (MQ=255) gtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACtgt < 3:1364110‑M2/69‑1 (MQ=255) gttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTAc > 1:228122‑M2/29‑101 (MQ=255) gacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCa < 3:517256‑M2/76‑1 (MQ=255) cggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACt < 1:29712‑M2/78‑1 (MQ=255) ggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTc > 1:975770‑M2/23‑101 (MQ=255) gcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTcc > 3:1399976‑M2/22‑101 (MQ=255) gagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCt < 3:654403‑M2/83‑1 (MQ=255) cgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGgc < 1:307997‑M2/86‑1 (MQ=255) gttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGgcg < 3:498160‑M2/87‑1 (MQ=255) tagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCt > 1:593061‑M2/13‑101 (MQ=255) tagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCt > 1:1286759‑M2/13‑101 (MQ=255) caggatcgtCCCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTtc < 1:797296‑M2/92‑1 (MQ=255) aggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTtct > 3:675103‑M2/9‑101 (MQ=255) atcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATNCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCa > 3:1139249‑M2/6‑101 (MQ=255) cgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGc < 2:40375‑M2/98‑1 (MQ=255) cgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGc < 2:121766‑M2/98‑1 (MQ=255) gtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCg < 3:341607‑M2/99‑1 (MQ=255) tCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCgg < 3:999544‑M2/100‑1 (MQ=255) cgCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCGGa > 1:1155404/1‑101 (MQ=255) | CATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCGGA > NC_007779/2322031‑2322231 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |