BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_007779	2,320,795	Δ1,336 bp		insD–insC	insD, insC

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007779	2320795–2322125	2322130	6–1336	71 [0]	[0] 71	insD–insC	insD,insC

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 2320794	0 (0.000)	65 (1.490)	55/188	0.0	100%	intergenic (+633/+11)	rcsB/insD	DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein
*	?	NC_007779	2322131 =	0 (0.000)	65 (1.490)	55/188	0.0	100%	intergenic (‑98/‑2582)	insC/atoS	IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC

CATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCGGA  >  NC_007779/2322031‑2322231

aaacgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtc                                                                                                      >  1:370706‑M2/101‑101 (MQ=255)

  acgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGc                                                                                                    <  1:1472288‑M2/3‑1 (MQ=255)

  acgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGc                                                                                                    <  3:968808‑M2/3‑1 (MQ=255)

   cgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGct                                                                                                   <  1:1414903‑M2/4‑1 (MQ=255)

   cgccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGct                                                                                                   >  3:734913‑M2/98‑101 (MQ=255)

    gccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGctc                                                                                                  <  2:16904‑M2/5‑1 (MQ=255)

    gccggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctcaccgctttgtccgttgacggcagagcgttagcaggatcgtCGctc                                                                                                  >  1:586094‑M2/97‑101 (MQ=255)

      cggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCtctc                                                                                                >  3:1509499‑M2/95‑101 (MQ=255)

      cggttaatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCtctc                                                                                                <  3:1360323‑M2/7‑1 (MQ=255)

          taatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCAtc                                                                                            <  1:599935‑M2/11‑1 (MQ=255)

          taatcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCAtc                                                                                            >  3:1134639‑M2/91‑101 (MQ=255)

            atcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCAtctc                                                                                          <  1:366959‑M2/13‑1 (MQ=255)

            atcggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCAtctc                                                                                          <  1:296074‑M2/13‑1 (MQ=255)

               ggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGAt                                                                                       >  3:462461‑M2/86‑101 (MQ=255)

               ggatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGAt                                                                                       <  1:248617‑M2/16‑1 (MQ=255)

                gatgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATc                                                                                      <  3:460342‑M2/17‑1 (MQ=255)

                 atgatcatccacgaccagaatcatcatatcgtcattatcgctgtccgctttgtccgttgcccgcagagcgttagcaggatcgtCGCTCTCCAGCTCGATCa                                                                                     >  1:577093‑M2/84‑101 (MQ=255)

                 atgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCa                                                                                     >  1:294125‑M2/84‑101 (MQ=255)

                  tgatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaa                                                                                    <  1:1227985‑M2/19‑1 (MQ=255)

                   gatcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaa                                                                                   <  1:1316027‑M2/20‑1 (MQ=255)

                    atcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaat                                                                                  <  2:2356‑M2/21‑1 (MQ=255)

                     tcatccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaata                                                                                 <  3:899052‑M2/22‑1 (MQ=255)

                      catccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaataa                                                                                >  3:922560‑M2/79‑101 (MQ=255)

                      catccacgacaagaatcatcatatcggcattaacgctgaccgctttgtccgttgacggaagagcgttagcaggatcgtCGCTCTCCATCTCGATCaaataa                                                                                >  1:1311016‑M2/79‑101 (MQ=255)

                         ccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAaataaata                                                                             >  3:309964‑M2/76‑101 (MQ=255)

                         ccacgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAaataaata                                                                             >  1:339233‑M2/76‑101 (MQ=255)

                           acgaccagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATAcg                                                                           <  4:8751‑M2/28‑1 (MQ=255)

                                cagaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCca                                                                      <  1:47854‑M2/33‑1 (MQ=255)

                                  gaatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCcaac                                                                    <  1:1500848‑M2/35‑1 (MQ=255)

                                   aatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCcaaca                                                                   <  2:121284‑M2/36‑1 (MQ=255)

                                   aatcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCcaaca                                                                   >  3:428592‑M2/66‑101 (MQ=255)

                                    atcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCcaacaa                                                                  <  3:516524‑M2/37‑1 (MQ=255)

                                     tcatcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAAt                                                                 >  3:1163873‑M2/64‑101 (MQ=255)

                                      catcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATg                                                                >  3:1112518‑M2/63‑101 (MQ=255)

                                      catcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATg                                                                >  3:843928‑M2/63‑101 (MQ=255)

                                       atcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGc                                                               >  1:493754‑M2/62‑101 (MQ=255)

                                       atcatatcgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGc                                                               >  1:355364‑M2/62‑101 (MQ=255)

                                              cgtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGc                                                        >  3:62480‑M2/55‑101 (MQ=255)

                                               gtcattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCt                                                       <  1:1570513‑M2/48‑1 (MQ=255)

                                                 cattatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCa                                                     >  3:415360‑M2/52‑101 (MQ=255)

                                                  attatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCCCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCAt                                                    <  1:944313‑M2/51‑1 (MQ=255)

                                                   ttatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATg                                                   >  3:1031399‑M2/50‑101 (MQ=255)

                                                   ttatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATg                                                   <  3:102222‑M2/52‑1 (MQ=255)

                                                   ttatcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATg                                                   <  1:1406095‑M2/52‑1 (MQ=255)

                                                     atcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCg                                                 >  3:1232463‑M2/48‑101 (MQ=255)

                                                      tcgctgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCgg                                                <  3:418852‑M2/55‑1 (MQ=255)

                                                          tgaccgctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGagca                                            >  3:971448‑M2/43‑101 (MQ=255)

                                                              cgctttgtccgttgccggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCca                                        >  4:82849‑M2/39‑101 (MQ=255)

                                                               gctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCcac                                       >  1:643573‑M2/38‑101 (MQ=255)

                                                                ctttgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCACCTCGATCAAATAAATACGCGCCAAAAATGCCGGTAGCTCATGCGGCGCAGCcaca                                      <  1:1255000‑M2/65‑1 (MQ=255)

                                                                   tgtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACtg                                   <  4:4085‑M2/68‑1 (MQ=255)

                                                                    gtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATCCGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACtgt                                  <  3:991317‑M2/69‑1 (MQ=255)

                                                                    gtccgttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACtgt                                  <  3:1364110‑M2/69‑1 (MQ=255)

                                                                        gttgacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTAc                              >  1:228122‑M2/29‑101 (MQ=255)

                                                                           gacggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCa                           <  3:517256‑M2/76‑1 (MQ=255)

                                                                             cggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACt                         <  1:29712‑M2/78‑1 (MQ=255)

                                                                              ggcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTc                        >  1:975770‑M2/23‑101 (MQ=255)

                                                                               gcagagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTcc                       >  3:1399976‑M2/22‑101 (MQ=255)

                                                                                  gagcgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCt                    <  3:654403‑M2/83‑1 (MQ=255)

                                                                                     cgttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGgc                 <  1:307997‑M2/86‑1 (MQ=255)

                                                                                      gttagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGgcg                <  3:498160‑M2/87‑1 (MQ=255)

                                                                                        tagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCt              >  1:593061‑M2/13‑101 (MQ=255)

                                                                                        tagcaggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCt              >  1:1286759‑M2/13‑101 (MQ=255)

                                                                                           caggatcgtCCCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTtc           <  1:797296‑M2/92‑1 (MQ=255)

                                                                                            aggatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTtct          >  3:675103‑M2/9‑101 (MQ=255)

                                                                                               atcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATNCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCa       >  3:1139249‑M2/6‑101 (MQ=255)

                                                                                                 cgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGc     <  2:40375‑M2/98‑1 (MQ=255)

                                                                                                 cgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGc     <  2:121766‑M2/98‑1 (MQ=255)

                                                                                                  gtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCg    <  3:341607‑M2/99‑1 (MQ=255)

                                                                                                   tCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCgg   <  3:999544‑M2/100‑1 (MQ=255)

                                                                                                    cgCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCGGa  >  1:1155404/1‑101 (MQ=255)

CATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTGTACCCACTCCCCTGGCGCTTTCTCCAGCGGA  >  NC_007779/2322031‑2322231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`