Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_007779 2,320,795 Δ1,336 bp insDinsC insD, insC

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007779 2320795–2322125 2322130 6–1336 71 [0] [0] 71 insD–insC insD,insC

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 23207940 (0.000)65 (1.490) 55/188 0.0 100% intergenic (+633/+11) rcsB/insD DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein
?NC_007779 2322131 = 0 (0.000)intergenic (‑98/‑2582) insC/atoS IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC

CAAACGCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATG  >  NC_007779/2320694‑2320894
                                                                                                    |                                                                                                    
cAAACGCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT                                                                                                      >  3:270969‑M1/1‑101 (MQ=255)
 aaaCGCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTc                                                                                                     >  1:370706‑M1/1‑100 (MQ=255)
   aCGCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgc                                                                                                   <  3:968808‑M1/101‑4 (MQ=255)
   aCGCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgc                                                                                                   <  1:1472288‑M1/101‑4 (MQ=255)
    cGCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgct                                                                                                  <  1:1414903‑M1/101‑5 (MQ=255)
    cGCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgct                                                                                                  >  3:734913‑M1/1‑97 (MQ=255)
     gCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctc                                                                                                 <  2:16904‑M1/101‑6 (MQ=255)
     gCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTCACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctc                                                                                                 >  1:586094‑M1/1‑96 (MQ=255)
       cGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctc                                                                                               >  3:1509499‑M1/1‑94 (MQ=255)
       cGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctc                                                                                               <  3:1360323‑M1/101‑8 (MQ=255)
           tAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatc                                                                                           >  3:1134639‑M1/1‑90 (MQ=255)
           tAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatc                                                                                           <  1:599935‑M1/101‑12 (MQ=255)
             aTCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctc                                                                                         <  1:296074‑M1/101‑14 (MQ=255)
             aTCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctc                                                                                         <  1:366959‑M1/101‑14 (MQ=255)
                ggATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgat                                                                                      <  1:248617‑M1/101‑17 (MQ=255)
                ggATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgat                                                                                      >  3:462461‑M1/1‑85 (MQ=255)
                 gatgatCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatc                                                                                     <  3:460342‑M1/101‑18 (MQ=255)
                  atgatCATCCACGACCAGAATCATCATATCGTCATTATCGCTGTCCGCTTTGTCCGTTGCCCGCAGAGCGTTAGCAGGATCGTcgctctccagctcgatca                                                                                    >  1:577093‑M1/1‑83 (MQ=255)
                  atgatCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatca                                                                                    >  1:294125‑M1/1‑83 (MQ=255)
                   tgatCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaa                                                                                   <  1:1227985‑M1/101‑20 (MQ=255)
                    gatCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaa                                                                                  <  1:1316027‑M1/101‑21 (MQ=255)
                     atcatcCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaat                                                                                 <  2:2356‑M1/101‑22 (MQ=255)
                      tcatcCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaata                                                                                <  3:899052‑M1/101‑23 (MQ=255)
                       catcCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataa                                                                               >  3:922560‑M1/1‑78 (MQ=255)
                       catcCACGACAAGAATCATCATATCGGCATTAACGCTGACCGCTTTGTCCGTTGACGGAAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataa                                                                               >  1:1311016‑M1/1‑78 (MQ=255)
                          ccACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaata                                                                            >  3:309964‑M1/1‑75 (MQ=255)
                          ccACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaata                                                                            >  1:339233‑M1/1‑75 (MQ=255)
                            aCGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacg                                                                          <  4:8751‑M1/101‑29 (MQ=255)
                                 cAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgcca                                                                     <  1:47854‑M1/101‑34 (MQ=255)
                                   gAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaac                                                                   <  1:1500848‑M1/101‑36 (MQ=255)
                                    aaTCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaaca                                                                  >  3:428592‑M1/1‑65 (MQ=255)
                                    aaTCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaaca                                                                  <  2:121284‑M1/101‑37 (MQ=255)
                                     atcatcATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaa                                                                 <  3:516524‑M1/101‑38 (MQ=255)
                                      tcatcaTATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaat                                                                >  3:1163873‑M1/1‑63 (MQ=255)
                                       catcatATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatg                                                               >  3:843928‑M1/1‑62 (MQ=255)
                                       catcatATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatg                                                               >  3:1112518‑M1/1‑62 (MQ=255)
                                        atcatATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgc                                                              >  1:355364‑M1/1‑61 (MQ=255)
                                        atcatATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgc                                                              >  1:493754‑M1/1‑61 (MQ=255)
                                               cGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagc                                                       >  3:62480‑M1/1‑54 (MQ=255)
                                                gTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagct                                                      <  1:1570513‑M1/101‑49 (MQ=255)
                                                  cATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctca                                                    >  3:415360‑M1/1‑51 (MQ=255)
                                                   aTTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgccctccatctcgatcaaataaatacgcgccaacaatgccggtagctcat                                                   <  1:944313‑M1/101‑52 (MQ=255)
                                                    ttATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatg                                                  <  3:102222‑M1/101‑53 (MQ=255)
                                                    ttATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatg                                                  <  1:1406095‑M1/101‑53 (MQ=255)
                                                    ttATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatg                                                  >  3:1031399‑M1/1‑49 (MQ=255)
                                                      aTCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcg                                                >  3:1232463‑M1/1‑47 (MQ=255)
                                                       tCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcgg                                               <  3:418852‑M1/101‑56 (MQ=255)
                                                           tGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagca                                           >  3:971448‑M1/1‑42 (MQ=255)
                                                               cGCTTTGTCCGTTGCCGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagcca                                       >  4:82849‑M1/1‑38 (MQ=255)
                                                                gCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccac                                      >  1:643573‑M1/1‑37 (MQ=255)
                                                                 cTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccacctcgatcaaataaatacgcgccaaaaatgccggtagctcatgcggcgcagccaca                                     <  1:1255000‑M1/101‑66 (MQ=255)
                                                                    tGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactg                                  <  4:4085‑M1/101‑69 (MQ=255)
                                                                     gTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatccgcgccaacaatgccggtagctcatgcggagcagccacactgt                                 <  3:991317‑M1/101‑70 (MQ=255)
                                                                     gTCCGTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgt                                 <  3:1364110‑M1/101‑70 (MQ=255)
                                                                         gTTGACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtac                             >  1:228122‑M1/1‑28 (MQ=255)
                                                                            gACGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtaccca                          <  3:517256‑M1/101‑77 (MQ=255)
                                                                              cGGCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccact                        <  1:29712‑M1/101‑79 (MQ=255)
                                                                               ggCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactc                       >  1:975770‑M1/1‑22 (MQ=255)
                                                                                gCAGAGCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcc                      >  3:1399976‑M1/1‑21 (MQ=255)
                                                                                   gagCGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccct                   <  3:654403‑M1/101‑84 (MQ=255)
                                                                                      cGTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggc                <  1:307997‑M1/101‑87 (MQ=255)
                                                                                       gTTAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggcg               <  3:498160‑M1/101‑88 (MQ=255)
                                                                                         tAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggcgct             >  1:1286759‑M1/1‑12 (MQ=255)
                                                                                         tAGCAGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggcgct             >  1:593061‑M1/1‑12 (MQ=255)
                                                                                            cAGGATCGTccctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggcgctttc          <  1:797296‑M1/101‑93 (MQ=255)
                                                                                             aGGATCGTcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggcgctttct         >  3:675103‑M1/1‑8 (MQ=255)
                                                                                                aTCGTcgctctccatctcgatcaaataaatacgcgccaacaatnccggtagctcatgcggagcagccacactgtgtacccactcccctggcgctttctcca      >  3:1139249‑M1/1‑5 (MQ=255)
                                                                                                  cgtcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggcgctttctccagc    <  2:40375‑M1/101‑99 (MQ=255)
                                                                                                  cgtcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggcgctttctccagc    <  2:121766‑M1/101‑99 (MQ=255)
                                                                                                   gtcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggcgctttctccagcg   <  3:341607‑M1/101‑100 (MQ=255)
                                                                                                    tcgctctccatctcgatcaaataaatacgcgccaacaatgccggtagctcatgcggagcagccacactgtgtacccactcccctggcgctttctccagcgg  <  3:999544‑M1/101‑101 (MQ=255)
                                                                                                    |                                                                                                    
CAAACGCCGGTTAATCGGATGATCATCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATG  >  NC_007779/2320694‑2320894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.