New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 3882311 =61 (1.300)6 (0.130) 4/60 5.3 coding (107/816 nt) atpB F0F1 ATP synthase subunit A
?REL606 4418297 = 53 (0.970)coding (728/861 nt) ytfG NAD(P)H:quinone oxidoreductase
Rejected: Position hash score below cutoff.

AGAACATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  >  REL606/3882276‑3882346
                                   |                                   
agagCATGGAGTCAATATTGATTGTCCAGAAGGTgg                                     <  1:3547390/36‑1 (MQ=255)
agaaCATGGAGTCAATATTGATTGTCCCGAAGATgg                                     >  1:4312206/1‑36 (MQ=25)
agaaCATGGAGTCAATATTGATTGTCCAGAAGGTgg                                     <  1:2441524/36‑1 (MQ=255)
agaaCATGGAGTCAATATTGATTGTCCAGAAGGTgg                                     <  1:2590071/36‑1 (MQ=255)
agaaCATGGAGTCAATATTGATTGTCCAGAAGGTgg                                     >  1:2804345/1‑36 (MQ=255)
  aaCATGGAGTCAATATTGATTGTCCAGAAGGTGGCt                                   <  1:1544578/36‑1 (MQ=255)
  aaCATGGAGTCAATATTGATTGTCCAGAAGGTGGCt                                   <  1:5676887/36‑1 (MQ=255)
   aCATGGAGTCAATATTGATTGTCCAGAAGGTGGCTg                                  >  1:1752287/1‑36 (MQ=255)
    cATTGAGTCAATATTGATTGTCCAGAAGGTGGCTgg                                 <  1:5950286/36‑1 (MQ=255)
    cATGGAGTCAATATTGATTGTCCAGAAGGTGGTTgg                                 >  1:3880927/1‑36 (MQ=255)
     aTGGAGTCAATATTGATTGTCCAGAAGGTGGCTggg                                >  1:6409935/1‑36 (MQ=255)
     aTGGAGTCAATATTGATTGTCCAGAAGGCGGCTggg                                >  1:5668565/1‑36 (MQ=255)
      tGGAGTCAATATTGATTGTCCAGAAGGTGGCTgggg                               >  1:609211/1‑36 (MQ=255)
       ggAGTCTTTATTGATTGTCCAGAAGGTGGCTggggg                              <  1:7367606/36‑1 (MQ=25)
       ggAATCAATATTGATTGTCCAGAAGGTGGCTggggg                              <  1:3613670/36‑1 (MQ=255)
         aGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGt                            >  1:3137330/1‑36 (MQ=255)
          gTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGtt                           >  1:7317990/1‑36 (MQ=255)
          gTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGtt                           <  1:823194/36‑1 (MQ=255)
          gTCAAGATTGATTGTCCAGAAGGTGGCTGGGGGGtt                           <  1:4289178/36‑1 (MQ=255)
           tCAATATTGATTGTCCAGAAGGTGGCTGGGGGGttt                          >  1:3407417/1‑36 (MQ=255)
            cAATATTGATTGTCCAGAAGGTGGCTGGGGGGtttt                         <  1:4413784/36‑1 (MQ=255)
             aaTATTGATTGTCCAGAAGGTGGCTGGGGGGTTTtg                        >  1:7385460/1‑36 (MQ=255)
             aaTATTGATTGTCCAGAAGGTGGCTGGGGGGTTTtg                        >  1:6631587/1‑36 (MQ=255)
               tatTGATTGTCCAGAAGGTGGCTGGGGGGTTTtgtg                      <  1:5852913/36‑1 (MQ=255)
                attgaatgTCCAGAAGGTGGCTGGGGGGTTTTGTgg                     <  1:6423401/36‑1 (MQ=255)
                 ttgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGa                    <  1:7278468/36‑1 (MQ=255)
                 ttgattgTCCAGAAGGTGGCTGGGGGGTTATGTGGa                    >  1:1666893/1‑36 (MQ=255)
                  tgattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGAt                   <  1:6112379/36‑1 (MQ=255)
                   gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc                  >  1:1904012/1‑36 (MQ=255)
                   gattgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATc                  <  1:6161556/36‑1 (MQ=255)
                    attgTCCAGAAGGTGGCTGGGGGGTTTTGTGGGTcc                 >  1:3163577/1‑36 (MQ=255)
                    attgTCCAGAAGGTGGCT.GGGGGTTTTGTGGATcca                >  1:562685/1‑36 (MQ=25)
                      tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac               >  1:166543/1‑36 (MQ=255)
                      tgTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccac               <  1:1690532/36‑1 (MQ=255)
                      tgTCCAGAAGGTGGCTGAGGGGTTTTGTGGATctac               >  1:4242357/1‑36 (MQ=25)
                       gTCCAGAAGGTGGCTGGGGGGTTTTGTGGGTccacc              >  1:7369938/1‑36 (MQ=255)
                       gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc              <  1:6201919/36‑1 (MQ=255)
                       gTCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacc              <  1:6881611/36‑1 (MQ=255)
                        tCCAGAAGGTGGCTGGGGGGTTTTGTGGATccacca             >  1:6373446/1‑36 (MQ=255)
                         ccAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAg            >  1:720947/1‑36 (MQ=255)
                          cAGAAGGTGGCTGGGGGGTTTTGTGGTTCTATCAGc           >  1:1793732/1‑36 (MQ=21)
                          cAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGc           >  1:6066514/1‑36 (MQ=255)
                           aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg          >  1:1445785/1‑36 (MQ=255)
                           aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg          <  1:5828591/36‑1 (MQ=255)
                           aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg          <  1:352780/36‑1 (MQ=255)
                           aGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCg          >  1:3580722/1‑36 (MQ=255)
                           aGAAGGTGGCTGGGGGGCTTTGTGGATCCACCAACg          >  1:3032750/1‑36 (MQ=25)
                            gAAGGTTGCTGGGGGGTTTTGTGGATCCACCAGCga         >  1:6502728/1‑36 (MQ=255)
                            gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCga         <  1:1968521/36‑1 (MQ=255)
                            gAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCga         >  1:4645474/1‑36 (MQ=255)
                             aaGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgcg        >  1:466412/1‑34 (MQ=255)
                             aaGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag        <  1:5379549/36‑1 (MQ=255)
                             aaGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgag        >  1:4040226/1‑36 (MQ=255)
                              aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgaga       >  1:3124103/1‑36 (MQ=255)
                              aGGTGGCTGGGGGGTTTTGTGGATCCACCAGCgaga       <  1:5935491/36‑1 (MQ=255)
                               ggTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGaa      >  1:3259851/1‑36 (MQ=255)
                                gTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAAt     <  1:2743751/36‑1 (MQ=255)
                                 tGGCTGGGGGGTTTTGTGGATCCACCAGCGAGaaag    >  1:2187962/1‑34 (MQ=255)
                                 tGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATg    <  1:7132805/36‑1 (MQ=255)
                                  ggCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGt   >  1:18682/1‑36 (MQ=255)
                                  ggCTGGGGGGTTTTGTGGATCCACCAGCGAAAAAGt   >  1:2966189/1‑36 (MQ=25)
                                   gCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTa  <  1:2424073/36‑1 (MQ=255)
                                   |                                   
AGAACATGGAGTCAATATTGATTGTCCAGAAGGTGGCTGGGGGGTTTTGTGGATCCACCAGCGAGAATGTA  >  REL606/3882276‑3882346

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 16 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG