New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 3882311 =61 (1.300)6 (0.130) 4/60 5.3 coding (107/816 nt) atpB F0F1 ATP synthase subunit A
?REL606 4418297 = 53 (0.970)coding (728/861 nt) ytfG NAD(P)H:quinone oxidoreductase
Rejected: Position hash score below cutoff.

TGCGTACATTCTCGCTGGTGGATCCACAAAACCCCCCAGC...................................  <  REL606/3882350‑3882311
...................................CCAGCATATCCGCCAGTCCGTCAGGCAGGCCAACGCTTTT  >  REL606/4418297‑4418331
                                                                           
TGCGTACATTCTCGCTGGTGGATCCACAAAACCCCC                                         >  1:3006296/1‑36 (MQ=255)
 GCGTACATTCTCGCTGGTGGATCCACAAAACCCCCC                                        >  1:3972629/1‑36 (MQ=255)
 GCGTACATTCTCGCTGGTGGATCCACAAAACCCCCC                                        >  1:2231610/1‑36 (MQ=255)
  CGTACATTCTCGCTGGTGGATCCACAAAACCCCCCA                                       <  1:2169579/36‑1 (MQ=255)
   GTACATTCTCGCTGGTGGATCCACAAAACCCCCCAG                                      >  1:4109222/1‑36 (MQ=255)
   GTACATTCTCGCTGGTGGATCCACAAAACCCCCCAG                                      <  1:1899837/36‑1 (MQ=255)
    TACATTCTCGCTGGTGGATCCACAAAACCCCCCAGC                                     >  1:2424073/1‑36 (MQ=255)
                         tCAAAACCCGCCAGCATATCCGCCAGTCCGTCAGGC                <  1:2152858/35‑1 (MQ=255)
                          CAAAACCCGCCAGCATATCCGCCAGTCCGTCAGGCA               <  1:1828994/36‑1 (MQ=255)
                          CAAAACCCCCCAGCATATCCGCCAGTCCGTCAGGCA               <  1:3489978/36‑1 (MQ=255)
                           AAAACCCCCCAGCATATCCGCCAGTCCGTCAGGCAG              <  1:6109720/36‑1 (MQ=255)
                               CCCCCCAACATATCCGCCAGTCCGTCAGGCAGGCCA          <  1:4775401/36‑1 (MQ=255)
                                 CCCGAGCATATCCGCCAGTCCGTCAGGCAGGCCAAC        <  1:2112931/36‑1 (MQ=255)
                                   CCAGCATATCCGCCAGTCCGTCAGGCAGGCCAACGC      >  1:6542421/1‑36 (MQ=255)
                                   CCAGCATATCCGCCAGTCCGCCAGGCAGGCCAACGC      >  1:6247414/1‑36 (MQ=255)
                                    CAGCATATCCGCCAGTCCGTCAGGCAGGCCAACGCT     >  1:2137620/1‑36 (MQ=255)
                                    CAGCATATCCGCCAGTCCGTCAGGCAGGCCAACGCT     >  1:4482259/1‑36 (MQ=255)
                                     AGCATATCCGCCAGTCCGTCAGGCAGGCCAACGCTT    >  1:185906/1‑36 (MQ=255)
                                     AGCATATCCGCCAGTCCGTCAGGCAGGCCAACGCTT    <  1:104499/36‑1 (MQ=255)
                                      aCATATCCGCCAGTCCGTCAGGCAGGCCAACGCTTT   <  1:7194527/35‑1 (MQ=255)
                                      GCATATCCGCCAGTCCGTCAGGCAGGCCACCGCTTT   >  1:4390052/1‑36 (MQ=255)
                                      GCATATCCGCCAGTCCGTCAGGCAGGCCAACGCTTT   <  1:7297822/36‑1 (MQ=255)
                                       CATACCCGCCAGTCCGTCAGGCAGGCCAACGCTTTT  <  1:2713557/36‑1 (MQ=255)
                                                                           
TGCGTACATTCTCGCTGGTGGATCCACAAAACCCCCCAGC...................................  <  REL606/3882350‑3882311
...................................CCAGCATATCCGCCAGTCCGTCAGGCAGGCCAACGCTTTT  >  REL606/4418297‑4418331

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 15 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG