New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 640118 =30 (0.620)9 (0.190) 4/62 5.5 intergenic (+36/+19) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 3198507 = 44 (0.800)coding (556/990 nt) tdcB threonine dehydratase
Rejected: Position hash score below cutoff.

GATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGA  >  REL606/640083‑640151
                                   |                                 
gATACGTCAGCAAGAATTCAAAACCCGCTTAATCAg                                   >  1:7193241/1‑36 (MQ=255)
gATACGTCAGCAAGAATTCAAAACCCGCTTAATCAg                                   <  1:6209699/36‑1 (MQ=255)
 aTACGTCAGCAAGAATTCAAAGCCCGCTTAATCAGc                                  <  1:2049925/36‑1 (MQ=255)
 aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc                                  <  1:1955680/36‑1 (MQ=255)
 aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc                                  <  1:4185544/36‑1 (MQ=255)
    catCAGCAAGAATTCAAAACCCGCTTAATCAGCggg                               <  1:3623960/34‑1 (MQ=255)
    cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg                               <  1:4740167/36‑1 (MQ=255)
     gTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt                              >  1:485880/1‑36 (MQ=255)
      tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt                             <  1:242287/36‑1 (MQ=255)
       cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt                            <  1:3342802/36‑1 (MQ=255)
         gCAAGAATTCAAAACCCGCTTAATCAGCTGGttttt                          <  1:7431128/36‑1 (MQ=255)
           aaGAATTCAAAACCCGCTTAATCAGCGGGttttttt                        <  1:2485553/36‑1 (MQ=255)
           aaGAATTCAAAACCCGCTTAATCAGCGGGttttttt                        >  1:6165924/1‑36 (MQ=255)
            aGAATTCAAAACCCGCTTAATCAGCGGGtttttttt                       <  1:6231276/36‑1 (MQ=255)
             gAATTCAAAACCCGCTTAATCAGCGGGttttttttt                      <  1:3193143/36‑1 (MQ=255)
               aTTCAAAACCCGCTTAATCAGCGGGttttttttttg                    >  1:1485646/1‑34 (MQ=255)
                 tCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTc                  <  1:4000580/36‑1 (MQ=255)
                  cAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCt                 >  1:6587376/1‑36 (MQ=255)
                  cAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCt                 <  1:5288963/36‑1 (MQ=255)
                  cAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCt                 >  1:6026799/1‑36 (MQ=255)
                    aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt               >  1:5852971/1‑36 (MQ=255)
                     aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa              <  1:470507/36‑1 (MQ=255)
                        ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgtg           <  1:6262571/36‑1 (MQ=255)
                            ttAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCg       <  1:3767396/36‑1 (MQ=255)
                            ttAATCAGCGGGTTTTTTTTTGATCTTTAGTGTGCg       >  1:1238060/1‑36 (MQ=255)
                              aaTCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGt     <  1:1645521/36‑1 (MQ=255)
                               aTCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt    <  1:2366250/36‑1 (MQ=255)
                               aTCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt    <  1:6728538/36‑1 (MQ=255)
                                 cAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGa  <  1:6068984/36‑1 (MQ=255)
                                 cAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGa  >  1:4466171/1‑36 (MQ=255)
                                   |                                 
GATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGA  >  REL606/640083‑640151

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG