New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 640118 =30 (0.620)9 (0.190) 4/62 5.5 intergenic (+36/+19) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 3198507 = 44 (0.800)coding (556/990 nt) tdcB threonine dehydratase
Rejected: Position hash score below cutoff.

GGCCTCAACCGCACACTAAAGACCAAAAAAAAACCCGC...................................  <  REL606/640155‑640118
..................................CCGCCACCACCAATTGGCACAATCACGTTATCGACATCA  >  REL606/3198507‑3198541
                                                                         
GGCCTCAACCGCACACTTAAGACCAAAAAAAAACCC                                       <  1:1968220/36‑1 (MQ=255)
 GCCTCAACCGCACACTAAAGACCAAAAAAAAACCCG                                      >  1:4347906/1‑36 (MQ=255)
                       CAAAAAAAAACCCGCCACCACCAATTGGCACAATCA                <  1:2557286/36‑1 (MQ=255)
                       CAAAAAAAAACCCGCCACCACCAATTGGCACAATCA                <  1:6894786/36‑1 (MQ=255)
                        AAAAAAAAACCCGCCCCCACCAATTGGCACAATCAC               <  1:6244249/36‑1 (MQ=255)
                           aatAAACCCGCCACCACCAATTGGCACAATCACGTT            <  1:4849564/33‑1 (MQ=255)
                           aatAAACCCGCCACCACCAATTGGCACAATCACGTT            <  1:5014972/33‑1 (MQ=255)
                           AAAAAACCCGCCACCACCAATTGGCACAATCACGTT            <  1:1627176/36‑1 (MQ=255)
                            AAAAAACCGCCACCACCAATTGGCACAATCACGTTA           <  1:3620856/36‑1 (MQ=255)
                              acACCCGCCACCACCAATTGGCACAATCACGTTATC         <  1:7320172/34‑1 (MQ=255)
                                 CCCGCCACCACCAATTGGCACAATCACGTTATCGAC      <  1:5382872/36‑1 (MQ=255)
                                  CCGCCACCACCAATTGGCACAATCACGTTTTCGACA     >  1:4467142/1‑36 (MQ=255)
                                   CGCCACCACCAATTGGCACAATCACGTTATCGACAT    >  1:766010/1‑36 (MQ=255)
                                    GCCACCACCAATTGGCACAATCACGTTATCGACATC   >  1:6090984/1‑36 (MQ=255)
                                     CCACCACCAATTGGCACAATCACGTTATCGACATCA  <  1:1678555/36‑1 (MQ=255)
                                                                         
GGCCTCAACCGCACACTAAAGACCAAAAAAAAACCCGC...................................  <  REL606/640155‑640118
..................................CCGCCACCACCAATTGGCACAATCACGTTATCGACATCA  >  REL606/3198507‑3198541

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 13 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG