| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 104 | = 16231 | 0 (0.000) | 17 (0.280) | 7/180 | 2.8 | 100% | intergenic (–/–) | –/– | –/– |
| ? | 15 | = 49030 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
CCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 15/48931‑49040 | ccATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCAc > 1:581033‑M2/1‑100 (MQ=255) cATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCAcg < 2:1298697‑M2/101‑3 (MQ=255) aTGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGTTAAGGCATTCAcgc < 2:706077‑M2/101‑4 (MQ=255) gACGCCAGTNATTTCGNGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCAcgccg < 2:777103‑M2/101‑6 (MQ=255) gACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCAcgccg < 2:1338679‑M2/101‑6 (MQ=255) aCGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCAcgccgc < 1:431346‑M2/101‑7 (MQ=255) ccAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCAcgccgcatc < 2:1512828‑M2/101‑10 (MQ=255) cAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCAcgccgcatcc < 1:306824‑M2/101‑11 (MQ=255) aGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCg > 1:356574‑M1/1‑100 (MQ=255) agaCGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagc > 1:1639279‑M1/1‑90 (MQ=255) aCGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcac < 2:1233586‑M1/101‑14 (MQ=255) cGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcaca < 1:1142646‑M1/101‑15 (MQ=255) cGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcaca > 1:672614‑M1/1‑87 (MQ=255) aaTACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaat < 2:1661300‑M1/101‑17 (MQ=255) aaTACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaat < 1:372306‑M1/101‑17 (MQ=255) aTACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatg < 2:37207‑M1/101‑18 (MQ=255) aCGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcc < 2:304523‑M1/101‑20 (MQ=255) aaGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgat < 2:297824‑M1/101‑24 (MQ=255) aTAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcg > 2:1323922‑M1/1‑75 (MQ=255) aaGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCATGCCGAATCCggcagtccagcacaataactgatgcgac > 2:1022197‑M1/1‑73 (MQ=255) aaGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgac < 2:394221‑M1/101‑29 (MQ=255) cGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgct > 1:642194‑M1/1‑70 (MQ=255) cGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgct > 2:593975‑M1/1‑70 (MQ=255) cGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgct > 1:1699405‑M1/1‑70 (MQ=255) gTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctg < 1:813316‑M1/101‑33 (MQ=255) ggggTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgc > 1:934079‑M1/1‑65 (MQ=255) gggTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcg < 1:378582‑M1/101‑38 (MQ=255) ggTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgt > 2:394359‑M1/1‑63 (MQ=255) tAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGCTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtct > 2:1043168‑M1/1‑61 (MQ=255) tAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtct > 2:8117‑M1/1‑61 (MQ=255) aaGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtctt < 2:18797‑M1/101‑42 (MQ=255) aGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGTTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtctta < 1:706082‑M1/101‑43 (MQ=255) aGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtctta < 2:291036‑M1/101‑43 (MQ=255) aGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtctta < 1:705552‑M1/101‑43 (MQ=255) ggATTGGTGTTCGTCGCAGCAAGCCATCCAGGCGGGATAAGGCATTCACGCCGCAGCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttat < 2:30890‑M1/101‑44 (MQ=255) ggATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttat < 2:496124‑M1/101‑44 (MQ=255) gATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatc < 2:477348‑M1/101‑45 (MQ=255) ttGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcag < 2:529197‑M1/101‑47 (MQ=255) ctgttCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcc > 2:549896‑M1/2‑52 (MQ=255) tgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcct > 1:786720‑M1/1‑51 (MQ=255) gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggccta > 2:793079‑M1/1‑50 (MQ=255) ttCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctac < 2:672609‑M1/101‑53 (MQ=255) tcgCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaa < 2:1345358‑M1/101‑57 (MQ=255) cgCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatggagcacaatgcctgatgggacgctgccgcgtcttatcaggcctacgagag > 2:869306‑M1/1‑44 (MQ=255) cgCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaag > 1:1278785‑M1/1‑44 (MQ=255) cagcaAGCCACCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagct < 2:431341‑M1/101‑60 (MQ=255) agcaAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagcta < 2:357399‑M1/101‑61 (MQ=255) agcaAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagcta < 1:1298703‑M1/101‑61 (MQ=255) caAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaat < 1:1712958‑M1/101‑63 (MQ=255) ttttgtaggtcggATAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcaga < 1:585158‑M2/95‑77 (MQ=255) ttttgtagggcggATAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcaga > 2:270550‑M2/7‑25 (MQ=255) tttgtaggtcgGATAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagac > 1:1051377‑M2/6‑24 (MQ=255) tttgtaggtcgGATAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagac > 1:1349766‑M2/6‑24 (MQ=255) tttgtaggtcgGATAAGGCGTTCAcgccgcatccgacatgtgcacaagatccctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagac < 2:1646531‑M2/96‑78 (MQ=255) cATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatca < 1:904762‑M1/101‑68 (MQ=255) gtaggTCGGATAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaa < 2:1336083‑M2/99‑81 (MQ=255) gtaggTCGGATAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaa < 1:948490‑M2/99‑81 (MQ=255) aGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgc > 2:161403‑M1/1‑29 (MQ=255) ggCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgct < 1:334751‑M1/101‑74 (MQ=255) gtcggATAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttctcaggcctacgtgcggcatcagacaaatgtc < 1:1286813‑M2/99‑85 (MQ=255) ccGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctgg < 1:852933‑M1/101‑76 (MQ=255) cGGATAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaatgtcac < 2:1432112‑M2/101‑87 (MQ=255) cGGATAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaatgtcac > 1:636296‑M2/1‑15 (MQ=255) cGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggt > 1:520121‑M1/1‑25 (MQ=255) gATAAGGCATTCACGCCGCATCCggcaatcgagcccaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaa < 2:382118‑M1/101‑79 (MQ=255) aTAAGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaatgtcactgc < 2:1279896‑M2/101‑90 (MQ=255) aTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgttggtaat < 1:1043173‑M1/101‑80 (MQ=255) aTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaat > 2:1015531‑M1/1‑22 (MQ=255) aTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaat > 1:888257‑M1/1‑22 (MQ=255) tAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatg > 1:1613904‑M1/1‑21 (MQ=255) aaGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaatgtcactgctt < 1:1193626‑M2/101‑92 (MQ=255) aaGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaatgtcactgctt < 1:789244‑M2/101‑92 (MQ=255) aGGCGTTCAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaatgtcactgcttt > 1:1404593‑M2/1‑9 (MQ=255) ggCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcg > 1:416171‑M1/1‑18 (MQ=255) gCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgt > 1:1194782‑M1/1‑17 (MQ=255) gttcAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaatgtcactgctttggtt < 1:968570‑M2/100‑97 (MQ=255) gttcAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaatgtcactgctttggtt < 2:513467‑M2/100‑97 (MQ=255) aTTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaa < 1:1512834‑M1/101‑87 (MQ=255) aTTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaa > 2:115205‑M1/1‑15 (MQ=255) aTTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaa > 2:25565‑M1/1‑15 (MQ=255) aTTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaa > 1:196812‑M1/1‑15 (MQ=255) cAcgccgcatccgacatttgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacgtgcggcatcagacaaatgtcactgctttggttctt > 1:1275665‑M2/1‑2 (MQ=255) | CCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 15/48931‑49040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |