New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 104 = 162310 (0.000)17 (0.280) 7/180 2.8 100% intergenic (–/–) –/– –/–
?15 = 49030 0 (0.000)intergenic (–/–) –/– –/–

TGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  104/16122‑16231
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatgcggcgTGAATGCCTTATCCGGCCTGGATGGCTTGCTGCGACGAACACCAATCCTTACCCCTGACGCTTATCTTCCGTATTCGTCTCGAAATCACTGGCGTCATGG  <  15/49030‑48931
                                                                                                                                                                                                                  
TGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCG                                                                                                               <  2:1676408/101‑1
   CTGGAGCGAAGAACCAAAGCAGTGACATTTGGCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGAT                                                                                                            >  2:1099604/1‑101
      GAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCG                                                                                                         <  1:123090/101‑1
        GCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGC                                                                                                       >  1:1181822/1‑101
        GCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGC                                                                                                       >  1:1362840/1‑101
           AAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTG                                                                                                    >  1:1275665/1‑101
              AACCAAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAAc                                                                                                 <  2:513467/101‑2
              AACCAAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAAc                                                                                                 <  1:968570/101‑2
                  AAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCT                                                                                             >  1:1404593/1‑101
                   AAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTT                                                                                            <  1:1193626/101‑1
                   AAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTT                                                                                            <  1:789244/101‑1
                     GCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTAT                                                                                          <  2:1279896/101‑1
                        GTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCG                                                                                       <  2:1432112/101‑1
                        GTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCG                                                                                       >  1:636296/1‑101
                          GACATTTGTCTGATGCCGCACGTAGGCCTGAGAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGac                                                                                     <  1:1286813/101‑3
                              TTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTac                                                                                 <  2:1336083/101‑3
                              TTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTac                                                                                 <  1:948490/101‑3
                                 GTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGGATCTTGTGCACATGTCGGATGCGGCGTGAACGCCTTATCCGACCTacaaa                                                                              <  2:1646531/101‑6
                                 GTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTacaaa                                                                              >  1:1051377/1‑96
                                 GTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTacaaa                                                                              >  1:1349766/1‑96
                                  TCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGCCCTacaaaa                                                                             >  2:270550/1‑95
                                  TCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCGTGAACGCCTTATCCGACCTacaaaa                                                                             <  1:585158/101‑7
                                                                                                    GGATGCGGCGTGAATGCCTTATCCGGCCTGGATGGCTTGCTGCGACGAACACCAATCCTTACCCCTGACGCTTATCTTCCGTATTCGTCTCGAAATCACTG           <  1:306824/101‑1
                                                                                                     GATGCGGCGTGAATGCCTTATCCGGCCTGGATGGCTTGCTGCGACGAACACCAATCCTTACCCCTGACGCTTATCTTCCGTATTCGTCTCGAAATCACTGG          <  2:1512828/101‑1
                                                                                                        GCGGCGTGAATGCCTTATCCGGCCTGGATGGCTTGCTGCGACGAACACCAATCCTTACCCCTGACGCTTATCTTCCGTATTCGTCTCGAAATCACTGGCGT       <  1:431346/101‑1
                                                                                                         CGGCGTGAATGCCTTATCCGGCCTGGATGGCTTGCTGCGACGAACACCAATCCTTACCCCTGACGCTTATCTTCCGTATTCGTCTCGAAATCACTGGCGTC      <  2:1338679/101‑1
                                                                                                         CGGCGTGAATGCCTTATCCGGCCTGGATGGCTTGCTGCGACGAACACCAATCCTTACCCCTGACGCTTATCTTCCGTATTCGTCNCGAAATNACTGGCGTC      <  2:777103/101‑1
                                                                                                           GCGTGAATGCCTTAACCGGCCTGGATGGCTTGCTGCGACGAACACCAACCCTTACCCCTGACGCTTATCTTCCGTATTCGTCTCGAAATCACTGGCGTCAT    <  2:706077/101‑1
                                                                                                            CGTGAATGCCTTATCCGGCCTGGATGGCTTGCTGCGACGAACACCAATCCTTACCCCTGACGCTTATCTTCCGTATTCGTCTCGAAATCACTGGCGTCATG   <  2:1298697/101‑1
                                                                                                             GTGAATGCCTTATCCGGCCTGGATGGCTTGCTGCGACGAACACCAATCCTTACCCCTGACGCTTATCTTCCGTATTCGTCTCGAAATCACTGGCGTCATGG  >  1:581033/1‑101
                                                                                                                                                                                                                  
TGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGTAGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCAAATGTCGGATGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  104/16122‑16231
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatgcggcgTGAATGCCTTATCCGGCCTGGATGGCTTGCTGCGACGAACACCAATCCTTACCCCTGACGCTTATCTTCCGTATTCGTCTCGAAATCACTGGCGTCATGG  <  15/49030‑48931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.