New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	135	= 12670	0 (0.000)	32 (0.480)	23/200	2.9	46.4%	intergenic (–/–)	–/–	–/–
	?	44	30875 =	74 (1.110)					intergenic (–/–)	–/–	–/–

CAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  135/12595‑12670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT  >  44/30875‑30971                                                                                                                                                                               cctgcGTAAGCTGGATAAGACGCTCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGA                                                                          <  2:1086272/96‑1  ctgcGTAAGCTGGATAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGAT                                                                         <  1:1004258/97‑1  ctgcGTAAGCTGGATAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGAT                                                                         >  2:1348332/5‑101     cGTAAGCTGGATAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGcc                                                                      >  2:236701/2‑99           CTGGATAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAG                                                                >  2:1055248/1‑101            TGGATAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGT                                                               >  2:1677049/1‑101             acaaAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTT                                                              >  2:209775/5‑101                TAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTAT                                                           <  2:472342/101‑1                TAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTAT                                                           <  1:329546/101‑1                TAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTAT                                                           >  1:1033792/1‑101                 AAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATG                                                          <  2:1663881/101‑1                 AAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATG                                                          >  1:1144236/1‑101                         CCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGAAGGCCCTTCGCTTTATTTGATGCCTGGCAGTTTATTGCGGGggg                                                  >  1:1444810/1‑98                            GCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCT                                               <  2:771256/101‑1                            GCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCT                                               <  1:374980/101‑1                             CGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGggggctc                                              >  2:1650692/1‑94                               TCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGTGTtgtccc                                            >  2:1673629/1‑95                               TCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCC                                            <  1:50146/101‑1                                   ATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGGCCTGCCCCCC                                        >  1:395306/1‑101                                          ATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGGGGCCTGCCCCCCCCCCCCC                                 >  1:872437/1‑101                                           TTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGGCCTACCCCCCccaccccc                                >  1:1225597/1‑93                                            TTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGTCGCATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGG                               <  1:1531310/101‑1                                             TTTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG                              <  1:1055253/101‑1                                              TTTTCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGC                             <  2:866210/101‑1                                                 TCTGCGCCAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGT                          <  1:1341295/101‑1                                                  CTGCGCCAATGCAAAAAGGCCATCCTGACTGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTT                         <  1:1497891/101‑1                                                        CAATGCAAAAAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG                   <  2:1641142/101‑1                                                                 AAGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCA          <  1:1391737/101‑1                                                                  AGGCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAA         <  1:1673635/101‑1                                                                    GCCATCCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAT       <  1:1346731/101‑1                                                                         CCTGCCGGGTGGCGTTTCTCTTTATTTGATGCCTGGCAGTTTATGGCGGGCTTCCTGCCCGCCGCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT  <  2:253569/101‑1                                                                         CCTGACGGATGGCCTTTCGCTTTATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT  <  1:1499874/101‑1                                                                                                                                                                               CAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  135/12595‑12670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCT  >  44/30875‑30971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.