New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	131	1 =	0 (0.000)	63 (0.950)	49/200	0.5	100%	intergenic (–/–)	–/–	–/–
	?	223	= 698	0 (0.000)					intergenic (–/–)	–/–	–/–

AAAACGCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  131/100‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG  <  223/698‑617                                                                                                                                                                                        AAAACGCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTT                                                                                   >  1:861150/1‑101  AAACGCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTA                                                                                  >  2:1248725/1‑101  AAACGCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCAGTGATGCTGCCAACTTA                                                                                  >  2:723947/1‑101    ACGCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACT                                                                                <  1:319304/101‑1    ACGCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACT                                                                                <  1:1294475/101‑1    ACGCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACT                                                                                <  2:1252593/101‑1      GCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGA                                                                              <  2:849735/101‑1      GCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGA                                                                              >  2:1069775/1‑101      GCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGA                                                                              <  1:1484815/101‑1        CCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATT                                                                            >  2:1232517/1‑101        CCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATT                                                                            >  1:680623/1‑101        CCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATT                                                                            >  1:1164639/1‑101         CTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTT                                                                           >  1:715854/1‑101           GCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAG                                                                         >  2:1182985/1‑101             ATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTG                                                                       <  2:698739/101‑1                GCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTAT                                                                    <  2:1337444/101‑1                   GGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT                                                                 <  1:1069780/101‑1                   GGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT                                                                 <  2:1316425/101‑1                     CGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG                                                               >  2:1513223/1‑101                      GGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT                                                              <  2:288284/101‑1                      GGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT                                                              >  1:179228/1‑101                         ATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT                                                           >  2:515702/1‑101                         ATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT                                                           >  2:249051/1‑101                         ATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGCTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT                                                           <  2:235294/101‑1                          TACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT                                                          <  2:67078/101‑1                            CCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                        <  2:1524270/101‑1                              AGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                      <  2:767309/101‑1                              AGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                      >  2:589198/1‑101                              AGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                      >  1:1686786/1‑101                               GACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG                                                     <  1:1182990/101‑1                               GACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTAGCGAATCGGTGATCCTGCCAACTTACTGATTTAGTGTTTGATGGGGTTTTTGAG                                                     >  2:1081981/1‑101                                  AGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTG                                                  >  2:1638360/1‑101                                   GTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC                                                 >  1:443925/1‑101                                   GTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC                                                 <  2:1269715/101‑1                                     ATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTC                                               >  2:576252/1‑101                                       GACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCA                                             <  1:285955/101‑1                                           AATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG                                         >  2:490578/1‑101                                             TATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT                                       >  2:159825/1‑101                                              ATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTT                                      >  1:1642001/1‑101                                                   GATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT                                 <  1:768753/101‑1                                                    ATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT                                >  1:395935/1‑101                                                     TGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTC                               >  1:248065/1‑101                                                        CCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAT                            >  1:800919/1‑101                                                        CCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAT                            >  1:1250977/1‑101                                                        CCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAT                            <  2:417251/101‑1                                                            GATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGC                        <  1:89909/101‑1                                                            GATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGC                        <  2:454132/101‑1                                                            GATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGC                        >  2:658545/1‑101                                                             ATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT                       >  2:653317/1‑101                                                                ATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTC                    <  1:751701/101‑1                                                                 TCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCC                   <  2:381677/101‑1                                                                 TCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCC                   <  1:1645072/101‑1                                                                     GGATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCC               >  2:520924/1‑101                                                                      GATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT              <  1:278446/101‑1                                                                      GATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT              <  2:150275/101‑1                                                                       ATAAGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTG             >  1:1360699/1‑101                                                                          AGTCGCGTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTC          >  1:205291/1‑101                                                                                GTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC    >  1:234541/1‑101                                                                                GTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC    >  1:1211484/1‑101                                                                                GTATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC    <  1:1268365/101‑1                                                                                 TATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACT   <  2:258253/101‑1                                                                                 TATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACT   >  1:636644/1‑101                                                                                  ATCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG  <  1:821522/101‑1                                                                                                                                                                                        AAAACGCCCTGCATTGCTGGCGGTATACCAGACAGTATGACGAATATTGCGATGCCCAAGATAATCCTGGATAAGTCGCGTATCGGTGATGCTGCCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  131/100‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG  <  223/698‑617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.