New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 25 = 2943230 (0.540)32 (0.590)
+CGC
27/194 1.4 68.7% intergenic (–/–) –/– –/–
?56 = 26090 0 (0.000)intergenic (–/–) –/– –/–

TTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  56/25990‑26090
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ttttAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAgggggg                                                                                                <  1:179981/101‑1 (MQ=255)
   tAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcg                                                                                             >  1:528528‑M2/1‑98 (MQ=255)
    aGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgc                                                                                            >  1:455212‑M2/1‑97 (MQ=255)
    aGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgc                                                                                            <  2:360243‑M2/101‑5 (MQ=255)
     gTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGGAGGCTGCGGCAGGGGGGgcgct                                                                                           >  2:1688185‑M2/1‑96 (MQ=255)
         aCAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcggttttc                                                                                       >  2:1716913‑M2/1‑92 (MQ=255)
          cAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcc                                                                                      >  2:588921‑M2/1‑91 (MQ=255)
                   cAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttctcgccccccc                                                                             <  2:569792‑M2/101‑20 (MQ=255)
                      aTAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaac                                                                          >  1:1068817‑M2/1‑79 (MQ=255)
                          aCGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctc                                                                      >  1:457714‑M2/1‑75 (MQ=255)
                            ggTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctc                                                                    >  1:1223949‑M2/1‑73 (MQ=255)
                                   ataATCACCCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagag                                                             >  2:913119‑M2/1‑66 (MQ=255)
                                    taATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagagg                                                            >  1:1553815‑M2/1‑65 (MQ=255)
                                      aTCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgctttttcccccccccccacccccccccccccaggg                                                          <  1:361713‑M2/101‑39 (MQ=255)
                                       tCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggc                                                         >  1:1533032‑M2/1‑62 (MQ=255)
                                          aCCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgag                                                      >  2:1364164‑M2/1‑59 (MQ=255)
                                           ccTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgagg                                                     >  1:1054498‑M2/1‑58 (MQ=255)
                                            cTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggg                                                    >  2:500440‑M2/1‑57 (MQ=255)
                                             tGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgagggg                                                   >  1:577500‑M2/1‑56 (MQ=255)
                                              ggCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgagggga                                                  >  2:305486‑M2/1‑55 (MQ=255)
                                                 tgtgAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcacccccaccctccccccagaggggggaggggaccg                                               <  2:1362334‑M2/101‑50 (MQ=255)
                                                     aGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtatt                                           >  2:848077‑M2/1‑48 (MQ=255)
                                                      gTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattg                                          >  1:284578‑M2/1‑47 (MQ=255)
                                                             taGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattgtgcaaat                                   >  1:1429436‑M2/1‑40 (MQ=255)
                                                               gTTGCCAGGGCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgtttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattgtgcaaatat                                 >  1:11476‑M2/1‑38 (MQ=255)
                                                                 tGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattgtgcaaatattg                               >  2:1182060‑M2/1‑36 (MQ=255)
                                                                  gCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattgtgcaaatattgt                              >  1:215675‑M2/1‑35 (MQ=255)
                                                                     aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattgtgcaaatattgttac                           >  1:623226‑M2/1‑32 (MQ=255)
                                                                     aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattgtgcaaatattgttac                           >  1:81810‑M2/1‑32 (MQ=255)
                                                                     aGGTCCGACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattgtgcaaatattgttac                           >  1:771524‑M2/1‑32 (MQ=255)
                                                                           gACCGGAGCAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctcccccgaggggcgggggggccggattgtgcaaaaattgttacccccgc                     <  2:1369635‑M2/101‑76 (MQ=255)
                                                                                   cAGGCTGCGGCAGGGGGGgcgcttttcccctccccctaaccctctccccagagggtcgaggcgaccgtattgtgcaaatattgttaccccagcaacaaaca             >  1:1692278‑M2/1‑18 (MQ=255)
                                                                                   cAGGCTGCGGCAGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattgtgcaaatattgttaccccagcaacaaaca             >  2:568268‑M2/1‑18 (MQ=255)
                                                                                              aGGGGGGgcgcttttcccctcaccctaaccctctccccagaggggcgaggggaccgtattgtgcaaatattgttaccccagcaacaaacaggctcatacag  >  2:444250‑M2/1‑7 (MQ=255)
                                                                                                    |                                                                                              
TTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  56/25990‑26090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.