New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 10 1 =0 (0.000)27 (0.420) 22/198 2.7 100% intergenic (–/–) –/– –/–
?43 = 31195 0 (0.000)intergenic (–/–) –/– –/–

GCGACTACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑T  >  43/31096‑31196
                                                                                                   |                                                              
gcgACTACAAAGGCGATGCCCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAt                                                               >  2:1604817‑M2/1‑100 (MQ=255)
gcgACTACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAt                                                               >  1:1363509‑M2/1‑100 (MQ=255)
gcgACTACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAt                                                               >  1:905081‑M2/1‑100 (MQ=255)
 cgACTACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtg                                                              >  1:553027‑M2/1‑99 (MQ=255)
   aCTACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgcc                                                            <  2:835496‑M2/101‑5 (MQ=255)
     tACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccgg                                                          >  2:195536‑M2/1‑95 (MQ=255)
        aaaGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatg                                                       <  1:241047‑M2/101‑10 (MQ=255)
           ggCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcgg                                                    <  1:1709558‑M2/101‑13 (MQ=255)
           ggCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcgg                                                    >  1:398397‑M2/1‑89 (MQ=255)
             cGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcg                                                  <  2:472115‑M2/101‑15 (MQ=255)
                 gACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgac                                              <  1:1421815‑M2/101‑19 (MQ=255)
                   cccGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccg                                            <  2:1477250‑M2/101‑21 (MQ=255)
                      gACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgcct                                         <  2:1417908‑M2/101‑24 (MQ=255)
                           cAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatcc                                    >  2:1622044‑M2/1‑73 (MQ=255)
                            aGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccg                                   >  2:493833‑M2/1‑72 (MQ=255)
                              cGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggc                                 <  1:1376544‑M2/101‑32 (MQ=255)
                               ggTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcc                                <  2:141008‑M2/101‑33 (MQ=255)
                                gTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcct                               <  2:846143‑M2/101‑34 (MQ=255)
                                gTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcct                               >  2:190280‑M2/1‑68 (MQ=255)
                                  aGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgacccccttatccggcctac                             <  2:859320‑M2/101‑36 (MQ=255)
                                       aaaaaCGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaac                        <  1:480363‑M2/101‑41 (MQ=255)
                                            cGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaaccgcaa                   <  2:937983‑M2/101‑46 (MQ=255)
                                            cGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaaccgcaa                   <  2:441595‑M2/101‑46 (MQ=255)
                                               aaGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaaccgcaagaa                <  2:363608‑M2/101‑49 (MQ=255)
                                               aaGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaaccgcaagaa                <  1:1018837‑M2/101‑49 (MQ=255)
                                                          aTTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaaccgcaagaattcaatatatt     <  2:356472‑M2/101‑60 (MQ=255)
                                                          aTTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaaccgcaagaattcaatatatt     <  2:1275715‑M2/101‑60 (MQ=255)
                                                           tttAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaaccgcaagaattcaatatattg    <  1:156106‑M2/101‑61 (MQ=255)
                                                           tttAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaaccgcaagaattcaatatattg    >  1:858550‑M2/1‑41 (MQ=255)
                                                             tAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCAtgccggatgcggcgtgaccgccttatccggcctacgaaaccgcaagaattcaatatattgca  >  1:1477256‑M2/1‑39 (MQ=255)
                                                                                                   |                                                              
GCGACTACAAAGGCGATGACCCGACGCCAGCGGTAGGGTAAAAACGAAAGGGGGCAACATTTAGTTGCCCCGAGATTGCTAACAAAGTGCGCGTTGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑T  >  43/31096‑31196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.