New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	10	1 =	0 (0.000)	27 (0.420)	22/198	2.7	100%	intergenic (–/–)	–/–	–/–
	?	43	= 31195	0 (0.000)					intergenic (–/–)	–/–	–/–

TGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  10/62‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCCTTTGTAGTCGC  <  43/31195‑31096                                                                                                                                                                    TGCAATATATTGAATTCTTGCGGTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTA                                                               >  1:1477256/1‑101   CAATATATTGAATTCTTGCGGTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAA                                                             >  1:858550/1‑101   CAATATATTGAATTCTTGCGGTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAA                                                             <  1:156106/101‑1    AATATATTGAATTCTTGCGGTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAAT                                                            <  2:1275715/101‑1    AATATATTGAATTCTTGCGGTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAAT                                                            <  2:356472/101‑1               ttcttgcggTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTT                                                 <  2:363608/92‑1               ttcttgcggTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTT                                                 <  1:1018837/92‑1                  ttgcggTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCG                                              <  2:937983/95‑1                  ttgcggTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCG                                              <  2:441595/95‑1                       gTTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTT                                         <  1:480363/100‑1                            GTAGGCCGGATAAGGGGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCT                                    <  2:859320/101‑1                              AGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTAC                                  <  2:846143/101‑1                              AGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTAC                                  >  2:190280/1‑101                               GGCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACC                                 <  2:141008/101‑1                                GCCGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCG                                <  1:1376544/101‑1                                  CGGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCT                              >  2:493833/1‑101                                   GGATAAGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTG                             >  2:1622044/1‑101                                        AGGCGGTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTC                        <  2:1417908/101‑1                                           cggTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGG                     <  2:1477250/98‑1                                             gTCACGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTC                   <  1:1421815/100‑1                                                 CGCCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCG               <  2:472115/101‑1                                                   CCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCC             >  1:398397/1‑101                                                   CCGCATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCC             <  1:1709558/101‑1                                                      CATCCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCCTTT          <  1:241047/101‑1                                                         CCGGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCCTTTGTA       >  2:195536/1‑101                                                           GGCATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCCTTTGTAGT     <  2:835496/101‑1                                                             CATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCCTTTGTAGTCG   >  1:553027/1‑101                                                              ATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCCTTTGTAGTCGC  >  1:1363509/1‑101                                                              ATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCCTTTGTAGTCGC  >  1:905081/1‑101                                                              ATGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGGCATCGCCTTTGTAGTCGC  >  2:1604817/1‑101                                                                                                                                                                    TGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  10/62‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTGAACAACGCGCACTTTGTTAGCAATCTCGGGGCAACTAAATGTTGCCCCCTTTCGTTTTTACCCTACCGCTGGCGTCGGGTCATCGCCTTTGTAGTCGC  <  43/31195‑31096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.