| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | 21717 = | 24 (0.360) | 35 (0.530) | 28/200 | 2.1 | 74.5% | intergenic (–/–) | –/– | –/– |
| ? | 182 | = 6967 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
AGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 182/6867‑6967 | aGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGc < 1:1196711/101‑1 (MQ=255)aGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGc < 1:944293/101‑1 (MQ=255) gCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCa < 1:682132‑M2/101‑2 (MQ=255) gagaTGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaa > 2:225804‑M2/1‑98 (MQ=255) gaTGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGcaaaat < 1:1083195/101‑6 (MQ=255) gtgGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGcaaaattgc > 1:141896/1‑93 (MQ=255) gtgGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGcaaaattgc > 2:1024499/1‑93 (MQ=255) tgGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGcaaaattgcc > 2:315724/1‑92 (MQ=255) tgGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGcaaaattgcc < 1:252694/101‑10 (MQ=255) tattGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttcctt < 1:1397366‑M2/101‑44 (MQ=255) attGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttg > 2:258063‑M2/1‑57 (MQ=255) aaTGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatat < 1:227482‑M2/101‑51 (MQ=255) aTGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatg > 2:532919‑M2/1‑50 (MQ=255) ggATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgca < 2:14863‑M2/101‑56 (MQ=255) ggATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgca > 1:126596‑M2/1‑46 (MQ=255) gATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcat > 1:467594‑M2/1‑45 (MQ=255) aaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactt < 2:60827‑M2/101‑62 (MQ=255) aaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattacttt < 2:1388483‑M2/101‑63 (MQ=255) ccGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtag > 2:47164‑M2/1‑35 (MQ=255) gggTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggc > 1:1204664‑M2/1‑33 (MQ=255) ttCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgagcattactttgtaggccgga < 2:48941‑M2/101‑73 (MQ=255) tCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggat > 1:313198‑M2/1‑28 (MQ=255) tCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggat > 1:737487‑M2/1‑28 (MQ=255) cccGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataa < 2:671048‑M2/101‑76 (MQ=255) cccGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataa < 1:842097‑M2/101‑76 (MQ=255) cGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataagg > 2:214427‑M2/1‑24 (MQ=255) cGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataagg > 1:1119953‑M2/1‑24 (MQ=255) ggTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggc < 1:986664‑M2/101‑79 (MQ=255) tttCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgt < 2:589834‑M2/101‑81 (MQ=255) ttCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgtt < 1:1602710‑M2/101‑82 (MQ=255) tCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttc < 2:72810‑M2/101‑83 (MQ=255) cAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgctttactttgtaggcccgataaggcgttct > 2:418584‑M2/1‑18 (MQ=255) cAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtagggcggataaggcgttca > 1:1440493‑M2/1‑18 (MQ=255) agagTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcac > 1:832591‑M2/1‑17 (MQ=255) gTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataagtcgttcacgcc < 2:1381260‑M2/101‑88 (MQ=255) gTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgcc < 2:692051‑M2/101‑88 (MQ=255) gTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgcc < 2:496952‑M2/101‑88 (MQ=255) atgatAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgca < 2:36533‑M2/101‑91 (MQ=255) tgatAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgcat < 1:155927‑M2/101‑92 (MQ=255) atAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgcatcc > 2:1663490‑M2/1‑8 (MQ=255) tAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgcatccg < 2:952753‑M2/101‑95 (MQ=255) gCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgcatccggcatg < 2:708437‑M2/101‑100 (MQ=255) | AGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 182/6867‑6967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |