| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 4,275,717 | 57510 bp→GTACA | [yjcO]–[lysU] | 52 genes [yjcO], fdhF, yjcP, yjcQ, yjcR, yjcS, alsK, alsE, alsC, alsA, alsB, rpiR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, phnC, phnB, phnA, yjdA, yjcZ, proP, basS, basR, yjdB, yjdE, adiY, adiA, melR, melA, melB, yjdF, fumB, dcuB, dcuR, dcuS, dcuS, yjdI, yjdJ, yjdK, [lysU] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4275717 | 4333226 | 57510 | 88 [2] | [1] 88 | [yjcO]–[lysU] | [yjcO],fdhF,yjcP,yjcQ,yjcR,yjcS,alsK,alsE,alsC,alsA,alsB,rpiR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,phnC,phnB,phnA,yjdA,yjcZ,proP,basS,basR,yjdB,yjdE,adiY,adiA,melR,melA,melB,yjdF,fumB,dcuB,dcuR,dcuS,dcuS,yjdI,yjdJ,yjdK,[lysU] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4275716 | 2 (0.030) | 83 (1.360) +GTACA |
65/190 | 0.0 | 98.3% | coding (232/690 nt) | yjcO | hypothetical protein |
| ? | REL606 | 4333227 = | 1 (0.020) | coding (211/1518 nt) | lysU | lysine tRNA synthetase, inducible | |||||
AGGCTATCTCGTGCAACGTACAGTTGAATACGGCCACCGACATCCTGCAACGTTACAAAGGAGGCTTTCCCCATGATACGACGGGTCATCATTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTG > REL606/4333127‑4333327 | gccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacac < 2:478959‑M2/1‑1 (MQ=255)gccagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacac > 2:1454257‑M2/101‑101 (MQ=255) cagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCaa > 2:1344621‑M2/99‑101 (MQ=255) cagcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgacccgattggtgatgtacaCaa > 1:247133‑M2/99‑101 (MQ=255) agcgttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAAc > 2:731081‑M2/98‑101 (MQ=255) gttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCga > 2:55516‑M2/95‑101 (MQ=255) gttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCga > 1:233575‑M2/95‑101 (MQ=255) ttacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCgag < 1:1611485‑M2/8‑1 (MQ=255) tacttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtggtgtacaCAACCggga > 2:842011‑M2/93‑101 (MQ=255) tcttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGAc < 2:490923‑M2/10‑1 (MQ=255) acttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGAc > 2:995580‑M2/92‑101 (MQ=255) acttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGAc > 1:1204882‑M2/92‑101 (MQ=255) gTGCAACGTACAGTTGAATACGGCCACCGACATCCTGCAACGTTACAAAGGAGGCTTTCCCCATGATACGACGGGTCATCATTCGGCCAGCAACCGAGACt > 1:1522039/1‑101 (MQ=255) cttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACt > 1:1312611‑M2/91‑101 (MQ=255) cttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACt > 1:1589108‑M2/91‑101 (MQ=255) ttcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACtt > 1:411984‑M2/90‑101 (MQ=255) tcaccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTc > 2:72346‑M2/89‑101 (MQ=255) cccttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCaa < 2:354718‑M2/15‑1 (MQ=255) accttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCaa > 1:1351245‑M2/87‑101 (MQ=255) cttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATg > 2:369584‑M2/85‑101 (MQ=255) cttctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATg > 2:1016606‑M2/85‑101 (MQ=255) tctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGtt < 2:511410‑M2/19‑1 (MQ=255) tctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGtt < 2:590690‑M2/19‑1 (MQ=255) ctttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGttt > 1:1061164‑M2/82‑101 (MQ=255) tttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTa < 1:1172556‑M2/21‑1 (MQ=255) tttactacccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTa < 1:1050242‑M2/21‑1 (MQ=255) ttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCACTGTTTaa < 1:1043214‑M2/22‑1 (MQ=255) ttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTaa < 2:79407‑M2/22‑1 (MQ=255) ttactgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTaa < 1:1248143‑M2/22‑1 (MQ=255) ctgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGa > 2:359241‑M2/77‑101 (MQ=255) ctgcccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAAACGAGACTTCAATGTTTAAGGa > 1:1326414‑M2/77‑101 (MQ=255) cccgcttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTc > 2:818307‑M2/74‑101 (MQ=255) cttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGt < 1:1355972‑M2/32‑1 (MQ=255) ttgcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGtt < 1:868927‑M2/33‑1 (MQ=255) gcgccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTcc < 2:879248‑M2/35‑1 (MQ=255) gccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTg < 1:1515415‑M2/37‑1 (MQ=255) ccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCCGTTCCTgg > 2:131773‑M2/64‑101 (MQ=255) ccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTgg < 2:996114‑M2/38‑1 (MQ=255) ccgctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTgg > 1:184685‑M2/64‑101 (MQ=255) gctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGtt > 1:1714206‑M2/62‑101 (MQ=255) ctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTa > 1:825873‑M2/61‑101 (MQ=255) ctttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTa < 2:938805‑M2/41‑1 (MQ=255) tttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTAt > 1:941698‑M2/60‑101 (MQ=255) tttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTAt < 2:570708‑M2/42‑1 (MQ=255) tttctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTAt < 1:983194‑M2/42‑1 (MQ=255) ctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCt < 2:1084295‑M2/45‑1 (MQ=255) ctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCt > 2:1573703‑M2/57‑101 (MQ=255) ctctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCt > 2:1092938‑M2/57‑101 (MQ=255) tctgcaagaacttttgcttttggatagtccagactgacctgattggtgatgtacaCAACCGAGACTTCAATTTTTAAGGATTCCAGTTCCTGGTTATCCtt < 2:1705551‑M2/46‑1 (MQ=255) ctgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTc < 2:139761‑M2/47‑1 (MQ=255) tgcaagaacttttgcttgtggatagtccagactgaccggatttgtgatgtacaCAACCGAGACTTCAATGCTTAAGGATTCCAGCTCCTGGTTCTCCTtca > 1:480682‑M2/54‑100 (MQ=255) tgcaagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCg < 2:479431‑M2/48‑1 (MQ=255) caagaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCa > 2:916062‑M2/52‑101 (MQ=255) agaacttttgcttgtggataggccagactgaccggattggtggtgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATTCATCGCATc > 2:1536051‑M2/50‑101 (MQ=255) gaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCa < 2:1011782‑M2/53‑1 (MQ=255) gaacttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCa < 1:1350523‑M2/53‑1 (MQ=255) ttttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAAct < 1:19768‑M2/57‑1 (MQ=255) tttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAActc < 2:1589102‑M2/58‑1 (MQ=255) tttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAActc > 2:1099435‑M2/44‑101 (MQ=255) tttgcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAActc > 2:78007‑M2/44‑101 (MQ=255) gcttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTc < 1:1546130‑M2/61‑1 (MQ=255) cttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCg < 1:869876‑M2/62‑1 (MQ=255) cttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCg > 2:761088‑M2/40‑101 (MQ=255) ttgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGt < 1:369584‑M2/63‑1 (MQ=255) tgtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTg > 2:950460‑M2/38‑101 (MQ=255) gtggatagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGc > 1:735626‑M2/37‑101 (MQ=255) atagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACt > 1:1192051‑M2/33‑101 (MQ=255) atagtccagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACt > 1:1139758‑M2/33‑101 (MQ=255) cagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCag < 1:56265‑M2/75‑1 (MQ=255) cagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCag > 2:438103‑M2/27‑101 (MQ=255) cagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCag < 2:1071909‑M2/75‑1 (MQ=255) cagactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCag > 2:1479060‑M2/27‑101 (MQ=255) gactgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCagag < 1:961374‑M2/77‑1 (MQ=255) actgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAgg > 1:782822‑M2/24‑101 (MQ=255) ctgaccggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGt > 1:1440411‑M2/23‑101 (MQ=255) accggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATg > 2:27770‑M2/20‑101 (MQ=255) cggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGt < 1:1123350‑M2/84‑1 (MQ=255) ggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTc < 1:358828‑M2/85‑1 (MQ=255) ggattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTc > 1:129327‑M2/17‑101 (MQ=255) gattggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTcg < 2:411979‑M2/86‑1 (MQ=255) tggtgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGAAAATGATCAGAGGTATGGTCgcgg > 2:436394‑M2/13‑101 (MQ=255) tgatgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGa > 1:1328318‑M2/10‑101 (MQ=255) atgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGaaa > 1:790887‑M2/8‑101 (MQ=255) tgtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGaaaa < 1:818312‑M2/95‑1 (MQ=255) gtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAAt > 2:668383‑M2/6‑101 (MQ=255) gtacaCAACCGAGACTTCAATGTTTAAGGATTCCAGATCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGCATGGTCGCGGCGAAAAt > 1:1418357‑M2/6‑101 (MQ=255) aCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCAtt > 1:1456198‑M2/2‑101 (MQ=255) cAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTg > 2:198533/1‑101 (MQ=255) | AGGCTATCTCGTGCAACGTACAGTTGAATACGGCCACCGACATCCTGCAACGTTACAAAGGAGGCTTTCCCCATGATACGACGGGTCATCATTCGGCCAGCAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTG > REL606/4333127‑4333327 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |