| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,034,358 | Δ19,491 bp | [insB‑14]–[wcaJ] | 20 genes [insB‑14], insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2034358–2035092 | 2053848 | 18757–19491 | 87 [0] | [0] 87 | [insB‑14]–[wcaJ] | [insB‑14],insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2034357 | 0 (0.000) | 87 (1.350) | 64/200 | 0.0 | 100% | noncoding (737/768 nt) | IS1 | repeat region |
| ? | REL606 | 2053849 = | 0 (0.000) | coding (823/1395 nt) | wcaJ | predicted UDP‑glucose lipid carrier transferase | |||||
ACCGGCCCCGGTGAGCTCAGTTTCACCGCCAGCGCAATGCAGCACAGCACCGGGGAGATCAGCAGCAGGATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAG > REL606/2053749‑2053946 | aaatctcctgataacttttttatatatatagccacgaaaagtagtgggaagaagtctaacaaatatccggtaatgactccgacttattgatagtgttttag < 2:409819‑M2/1‑1 (MQ=255) aatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGt < 1:914870‑M2/2‑1 (MQ=255) aatctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGt > 1:953309‑M2/100‑101 (MQ=255) atctcctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGtt > 1:1029915‑M2/99‑101 (MQ=255) cctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAg < 1:224285‑M2/7‑1 (MQ=255) ctgataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGc < 1:715217‑M2/8‑1 (MQ=255) gataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAg > 2:105695‑M2/92‑101 (MQ=255) gataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAg > 2:799059‑M2/92‑101 (MQ=255) ataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAgg < 2:793598‑M2/11‑1 (MQ=255) ataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAgg < 1:1445604‑M2/11‑1 (MQ=255) ataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAgg < 2:1173601‑M2/11‑1 (MQ=255) ataacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAgg < 1:1510856‑M2/11‑1 (MQ=255) aacttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCg > 2:570464‑M2/89‑101 (MQ=255) cttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGt > 1:910410‑M2/87‑101 (MQ=255) cttttttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgctttaGTTTGAGCAGGCGGt > 1:147679‑M2/87‑101 (MQ=255) tttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAAc < 1:325727‑M2/19‑1 (MQ=255) ttatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAAcc > 1:959199‑M2/82‑101 (MQ=255) tatatatatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAAccc > 1:852611‑M2/81‑101 (MQ=255) atatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGaa > 2:991595‑M2/76‑101 (MQ=255) atatagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCAGGTAACTCCGCaa > 2:1334585‑M2/76‑101 (MQ=255) atagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAg < 2:1182486‑M2/28‑1 (MQ=255) tagccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgc < 1:1326990‑M2/29‑1 (MQ=255) gccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactcccgcttattgatagtgttttaGTTTGAGCAGGCGATGAACCCCGGAAAgcgg < 2:1078383‑M2/31‑1 (MQ=255) gccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcgg < 2:1180472‑M2/31‑1 (MQ=255) ccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcggc > 2:285918‑M2/70‑101 (MQ=255) ccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcggc > 1:902094‑M2/70‑101 (MQ=255) ccacgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAgcggc < 2:814966‑M2/32‑1 (MQ=255) cgaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCgtg < 1:997890‑M2/35‑1 (MQ=255) gaaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCgtgt > 1:1189818‑M2/66‑101 (MQ=255) aaaactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTc > 2:871948‑M2/65‑101 (MQ=255) aactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCAt > 1:379150‑M2/63‑101 (MQ=255) aactagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCAt > 2:1245982‑M2/63‑101 (MQ=255) ctagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATAc < 2:1000293‑M2/41‑1 (MQ=255) tagtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACa < 1:19177‑M2/42‑1 (MQ=255) agtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAg < 2:425437‑M2/43‑1 (MQ=255) agtgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAg > 2:1705256‑M2/59‑101 (MQ=255) tgggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCg > 1:327500‑M2/57‑101 (MQ=255) ggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGc > 2:1573444‑M2/55‑101 (MQ=255) ggaagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGc > 2:331996‑M2/55‑101 (MQ=255) aagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGcac > 1:756440‑M2/53‑101 (MQ=255) aagaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGcac > 2:1111518‑M2/53‑101 (MQ=255) gaagtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGcacca < 1:1191289‑M2/51‑1 (MQ=255) agtctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCaccacc > 2:784032‑M2/49‑101 (MQ=255) ctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGt > 2:1388440‑M2/46‑101 (MQ=255) ctaacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGCCATACAGCGGCACCACCGGt > 1:943218‑M2/46‑101 (MQ=255) aacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTAc < 2:953304‑M2/58‑1 (MQ=255) aacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTAc < 2:902089‑M2/58‑1 (MQ=255) aacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTAc > 2:87647‑M2/44‑101 (MQ=255) aacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTAc < 1:1362025‑M2/58‑1 (MQ=255) aacaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTAc < 2:1134566‑M2/58‑1 (MQ=255) acaaatatccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACg < 1:1549899‑M2/59‑1 (MQ=255) atccggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTc > 1:1350848‑M2/37‑101 (MQ=255) cggtaatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCAtc > 2:1049011‑M2/34‑101 (MQ=255) taatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATctct > 2:1042114‑M2/31‑101 (MQ=255) aatgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCtt > 1:84170‑M2/30‑101 (MQ=255) atgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAGCCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTc < 1:98615‑M2/73‑1 (MQ=255) atgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTc < 1:1408803‑M2/73‑1 (MQ=255) tgactccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCg > 1:508194‑M2/28‑101 (MQ=255) gctccaacttattgatagtgttttaGTTTGAGCAGGCGGTTACCCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAg < 1:1598823‑M2/76‑1 (MQ=255) actccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAg > 1:1717006‑M2/26‑101 (MQ=255) actccaacttattgatagtgttttaGTTTGAACAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAg > 2:1658569‑M2/26‑101 (MQ=255) tccaacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGc > 2:512166‑M2/24‑101 (MQ=255) caacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGt < 1:1254340‑M2/80‑1 (MQ=255) aacttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTg > 2:1136046‑M2/21‑101 (MQ=255) ttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAAt < 2:147679‑M2/84‑1 (MQ=255) ttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAAt < 2:1487432‑M2/84‑1 (MQ=255) ttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAAt < 1:1315408‑M2/84‑1 (MQ=255) ttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAAt > 2:1356955‑M2/18‑101 (MQ=255) ttattgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAAt < 1:1245987‑M2/84‑1 (MQ=255) attgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATgg < 1:474582‑M2/86‑1 (MQ=255) ttgatagtgttttaGTTTGAGCAGGAGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGga > 2:504100‑M2/15‑101 (MQ=255) tgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGgag > 1:587390‑M2/14‑101 (MQ=255) tgatagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGgag < 1:703793‑M2/88‑1 (MQ=255) tagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAAt < 2:161146‑M2/91‑1 (MQ=255) tagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAAt > 1:228145‑M2/11‑101 (MQ=255) tagtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGCACGCCATTCATCTCTTCGAGGCGTGAATGGAGAAt > 2:1075489‑M2/11‑101 (MQ=255) agtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTGCGCCATTCATCTCTTCGAGGCGTGAATGGAGAATg < 1:541729‑M2/92‑1 (MQ=255) agtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATg > 2:547299‑M2/10‑101 (MQ=255) agtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATg < 2:777603‑M2/92‑1 (MQ=255) gtgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGt < 2:1470613‑M2/93‑1 (MQ=255) tgttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGtt < 2:1029910‑M2/94‑1 (MQ=255) gttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCGTTCATCTCTTCGAGGCGTGAATGGAGAATGTTg < 2:431373‑M2/95‑1 (MQ=255) gttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAACGTTg > 1:446305‑M2/7‑101 (MQ=255) ttttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGa < 2:959194‑M2/96‑1 (MQ=255) tttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGaa < 1:991600‑M2/97‑1 (MQ=255) ttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAg < 2:852606‑M2/98‑1 (MQ=255) ttaGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAg < 1:562229‑M2/98‑1 (MQ=255) | ACCGGCCCCGGTGAGCTCAGTTTCACCGCCAGCGCAATGCAGCACAGCACCGGGGAGATCAGCAGCAGGATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAG > REL606/2053749‑2053946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |