| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,034,358 | Δ19,491 bp | [insB‑14]–[wcaJ] | 20 genes [insB‑14], insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2034358–2035092 | 2053848 | 18757–19491 | 87 [0] | [0] 87 | [insB‑14]–[wcaJ] | [insB‑14],insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2034357 | 0 (0.000) | 87 (1.350) | 64/200 | 0.0 | 100% | noncoding (737/768 nt) | IS1 | repeat region |
| ? | REL606 | 2053849 = | 0 (0.000) | coding (823/1395 nt) | wcaJ | predicted UDP‑glucose lipid carrier transferase | |||||
AAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTC > REL606/2034258‑2034455 | aaaTCTCCTGATAACTTTTTTATATATATAGCCACGAAAAGTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCGACTTATTGATAGTGTTTTAg < 2:409819‑M1/101‑2 (MQ=255) aaTCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgt < 1:914870‑M1/101‑3 (MQ=255) aaTCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgt > 1:953309‑M1/1‑99 (MQ=255) aTCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtt > 1:1029915‑M1/1‑98 (MQ=255) ccTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgag < 1:224285‑M1/101‑8 (MQ=255) cTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagc < 1:715217‑M1/101‑9 (MQ=255) gATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcag > 2:105695‑M1/1‑91 (MQ=255) gATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcag > 2:799059‑M1/1‑91 (MQ=255) aTAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcagg < 2:793598‑M1/101‑12 (MQ=255) aTAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcagg < 1:1445604‑M1/101‑12 (MQ=255) aTAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcagg < 2:1173601‑M1/101‑12 (MQ=255) aTAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcagg < 1:1510856‑M1/101‑12 (MQ=255) aaCTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcg > 2:570464‑M1/1‑88 (MQ=255) cTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggt > 1:910410‑M1/1‑86 (MQ=255) cTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGCTTTAgtttgagcaggcggt > 1:147679‑M1/1‑86 (MQ=255) tttATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaac < 1:325727‑M1/101‑20 (MQ=255) ttATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaacc > 1:959199‑M1/1‑81 (MQ=255) tatatatataGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccc > 1:852611‑M1/1‑80 (MQ=255) atataGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaa > 2:991595‑M1/1‑75 (MQ=255) atataGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcaggtaactccgcaa > 2:1334585‑M1/1‑75 (MQ=255) ataGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaag < 2:1182486‑M1/101‑29 (MQ=255) taGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagc < 1:1326990‑M1/101‑30 (MQ=255) gCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCCGCTTATTGATAGTGTTTTAgtttgagcaggcgatgaaccccggaaagcgg < 2:1078383‑M1/101‑32 (MQ=255) gCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcgg < 2:1180472‑M1/101‑32 (MQ=255) ccACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggc > 2:285918‑M1/1‑69 (MQ=255) ccACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggc > 1:902094‑M1/1‑69 (MQ=255) ccACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggc < 2:814966‑M1/101‑33 (MQ=255) cGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtg < 1:997890‑M1/101‑36 (MQ=255) gAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgt > 1:1189818‑M1/1‑65 (MQ=255) aaaaCTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtc > 2:871948‑M1/1‑64 (MQ=255) aaCTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcat > 1:379150‑M1/1‑62 (MQ=255) aaCTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcat > 2:1245982‑M1/1‑62 (MQ=255) cTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatac < 2:1000293‑M1/101‑42 (MQ=255) tAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcataca < 1:19177‑M1/101‑43 (MQ=255) aGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacag < 2:425437‑M1/101‑44 (MQ=255) aGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacag > 2:1705256‑M1/1‑58 (MQ=255) tGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcg > 1:327500‑M1/1‑56 (MQ=255) ggAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggc > 2:1573444‑M1/1‑54 (MQ=255) ggAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggc > 2:331996‑M1/1‑54 (MQ=255) aagaagTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcac > 1:756440‑M1/1‑52 (MQ=255) aagaagTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcac > 2:1111518‑M1/1‑52 (MQ=255) gaagTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcacca < 1:1191289‑M1/101‑52 (MQ=255) agTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccacc > 2:784032‑M1/1‑48 (MQ=255) cTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggt > 2:1388440‑M1/1‑45 (MQ=255) cTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgccatacagcggcaccaccggt > 1:943218‑M1/1‑45 (MQ=255) aaCAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtac < 2:953304‑M1/101‑59 (MQ=255) aaCAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtac < 2:902089‑M1/101‑59 (MQ=255) aaCAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtac > 2:87647‑M1/1‑43 (MQ=255) aaCAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtac < 1:1362025‑M1/101‑59 (MQ=255) aaCAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtac < 2:1134566‑M1/101‑59 (MQ=255) aCAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacg < 1:1549899‑M1/101‑60 (MQ=255) atCCGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattc > 1:1350848‑M1/1‑36 (MQ=255) cGGTAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatc > 2:1049011‑M1/1‑33 (MQ=255) tAATGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctct > 2:1042114‑M1/1‑30 (MQ=255) aaTGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctctt > 1:84170‑M1/1‑29 (MQ=255) aTGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttagccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttc < 1:98615‑M1/101‑74 (MQ=255) aTGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttc < 1:1408803‑M1/101‑74 (MQ=255) tGACTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcg > 1:508194‑M1/1‑27 (MQ=255) gctCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttacccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgag < 1:1598823‑M1/100‑77 (MQ=255) aCTCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgag > 1:1717006‑M1/1‑25 (MQ=255) aCTCCAACTTATTGATAGTGTTTTAgtttgaacaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgag > 2:1658569‑M1/1‑25 (MQ=255) tCCAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggc > 2:512166‑M1/1‑23 (MQ=255) cAACTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgt < 1:1254340‑M1/101‑81 (MQ=255) aaCTTATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtg > 2:1136046‑M1/1‑20 (MQ=255) ttATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaat < 2:147679‑M1/101‑85 (MQ=255) ttATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaat < 2:1487432‑M1/101‑85 (MQ=255) ttATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaat < 1:1315408‑M1/101‑85 (MQ=255) ttATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaat > 2:1356955‑M1/1‑17 (MQ=255) ttATTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaat < 1:1245987‑M1/101‑85 (MQ=255) aTTGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatgg < 1:474582‑M1/101‑87 (MQ=255) ttGATAGTGTTTTAgtttgagcaggaggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatgga > 2:504100‑M1/1‑14 (MQ=255) tGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggag > 1:587390‑M1/1‑13 (MQ=255) tGATAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggag < 1:703793‑M1/101‑89 (MQ=255) tAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaat < 2:161146‑M1/101‑92 (MQ=255) tAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaat > 1:228145‑M1/1‑10 (MQ=255) tAGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggcacgccattcatctcttcgaggcgtgaatggagaat > 2:1075489‑M1/1‑10 (MQ=255) aGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtgcgccattcatctcttcgaggcgtgaatggagaatg < 1:541729‑M1/101‑93 (MQ=255) aGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatg > 2:547299‑M1/1‑9 (MQ=255) aGTGTTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatg < 2:777603‑M1/101‑93 (MQ=255) gtgtTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgt < 2:1470613‑M1/101‑94 (MQ=255) tgtTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgtt < 2:1029910‑M1/101‑95 (MQ=255) gtTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccgttcatctcttcgaggcgtgaatggagaatgttg < 2:431373‑M1/101‑96 (MQ=255) gtTTTAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaacgttg > 1:446305‑M1/1‑6 (MQ=255) ttttAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttga < 2:959194‑M1/101‑97 (MQ=255) tttAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttgaa < 1:991600‑M1/101‑98 (MQ=255) ttAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttgaag < 2:852606‑M1/101‑99 (MQ=255) ttAgtttgagcaggcggttaaccccggaaagcggcgtgtcatacagcggcaccaccggtacgccattcatctcttcgaggcgtgaatggagaatgttgaag < 1:562229‑M1/101‑99 (MQ=255) | AAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTC > REL606/2034258‑2034455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |