Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 2,405,131 IS1 (–) +9 bp coding (168‑176/1347 nt) fadL → long‑chain fatty acid outer membrane transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2263507NA (NA)83 (1.290) 57/200 0.1 97.4% noncoding (1/768 nt) IS1 repeat region
?REL606 2405131 = 2 (0.030)coding (168/1347 nt) fadL long‑chain fatty acid outer membrane transporter
* ? REL606 = 24051392 (0.030)82 (1.270) 63/200 0.1 97.4% coding (176/1347 nt) fadL long‑chain fatty acid outer membrane transporter
?REL606 2407442 = NA (NA)noncoding (768/768 nt) IS1 repeat region

TATTGTAGTGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTC  >  REL606/2407343‑2407538
                                                                                                   |                                                                                                
tatTGTAGTGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAgg                                                                                                 <  1:1429209/101‑1 (MQ=255)
 atTGTAGTGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGt                                                                                                <  2:291335/101‑1 (MQ=255)
  ttGTAGTGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTa                                                                                               <  1:1096347/101‑1 (MQ=255)
   tGTAGTGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTaa                                                                                              <  1:1404995/101‑1 (MQ=255)
    gTAGTGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAAt                                                                                             >  1:985804/1‑101 (MQ=255)
      aGTGAAAACTCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTTTCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGa                                                                                           <  1:1627162/101‑1 (MQ=255)
      aGTGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGa                                                                                           >  2:1098723/1‑101 (MQ=255)
       gTGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGAc                                                                                          <  2:163514/101‑1 (MQ=255)
        tGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACt                                                                                         <  1:1212822/101‑1 (MQ=255)
          aaaaCGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTcc                                                                                       >  1:407383/1‑101 (MQ=255)
          aaaaCGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTcc                                                                                       <  2:1216383/101‑1 (MQ=255)
          aaaaCGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTcc                                                                                       >  2:1444338/1‑101 (MQ=255)
              cGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACt                                                                                   <  1:1330559/101‑1 (MQ=255)
               gCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACtt                                                                                  >  1:1243045/1‑101 (MQ=255)
               gCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACtt                                                                                  >  1:332613/1‑101 (MQ=255)
                 cAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTAt                                                                                <  2:316812/101‑1 (MQ=255)
                 cAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTAt                                                                                <  2:1690918/101‑1 (MQ=255)
                   ggAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTg                                                                              <  1:458369/101‑1 (MQ=255)
                   ggAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTg                                                                              >  1:906534/1‑101 (MQ=255)
                       tGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAg                                                                          <  2:1382809/101‑1 (MQ=255)
                        gCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAgt                                                                         <  2:1587961/101‑1 (MQ=255)
                          ttCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAgtgt                                                                       <  2:971137/101‑1 (MQ=255)
                          ttCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAgtgt                                                                       >  2:727296/1‑101 (MQ=255)
                           tCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGtt                                                                      <  2:704946/101‑1 (MQ=255)
                               cGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                                  <  2:1287628/101‑1 (MQ=255)
                               cGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                                  <  2:1568608/101‑1 (MQ=255)
                               cGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                                  <  1:69831/101‑1 (MQ=255)
                                gtagtgtGAAAGCAGTAAAGCTATCATGGCAGAACCATTTGCAACTGGTAACGAGCATCAGGTTTTACGTAATGGCTCCAACTTATTGATAGTGTTTTATg                                                                 <  2:747119/95‑1 (MQ=25)
                                gTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                                 <  1:52873/101‑1 (MQ=255)
                                   gTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                              >  1:823226/1‑101 (MQ=255)
                                   gTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                              >  2:76541/1‑101 (MQ=255)
                                    tttGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                             <  2:400574/101‑1 (MQ=255)
                                     ttGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                                            <  1:510071/101‑1 (MQ=255)
                                      tGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                           >  1:582709/1‑101 (MQ=255)
                                      tGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                           <  2:985799/101‑1 (MQ=255)
                                       gAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                          >  1:865514/1‑101 (MQ=255)
                                       gAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                          <  2:1573704/101‑1 (MQ=255)
                                        aaaGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa                                                         >  1:502746/1‑101 (MQ=255)
                                          aGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                                       <  2:354705/101‑1 (MQ=255)
                                          aGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt                                                       <  1:1652824/101‑1 (MQ=255)
                                           gCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg                                                      <  1:190498/101‑1 (MQ=255)
                                              gTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                                                   <  2:850672/101‑1 (MQ=255)
                                               tAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCg                                                  <  1:725531/101‑1 (MQ=255)
                                                aaaGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGa                                                 >  1:1476919/1‑101 (MQ=255)
                                                    cTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                             <  1:80041/101‑1 (MQ=255)
                                                     tATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                                            <  2:132615/101‑1 (MQ=255)
                                                      aTCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt                                           <  1:1040812/101‑1 (MQ=255)
                                                         aTGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt                                        <  1:612631/101‑1 (MQ=255)
                                                         aTGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt                                        <  2:514838/101‑1 (MQ=255)
                                                           ggCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                                      >  2:1364231/1‑101 (MQ=255)
                                                            cgatcttCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                                     <  1:250363/95‑1 (MQ=255)
                                                              aGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                   >  2:1545742/1‑101 (MQ=255)
                                                               gAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                  <  2:792402/101‑1 (MQ=255)
                                                               gAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                  >  1:566333/1‑101 (MQ=255)
                                                               gAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                  <  2:487569/101‑1 (MQ=255)
                                                                aaTCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                                 >  1:362204/1‑101 (MQ=255)
                                                                aaTCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                                 <  2:895471/101‑1 (MQ=255)
                                                                aaTCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                                 <  1:1673412/101‑1 (MQ=255)
                                                                aaTCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                                 >  2:1185653/1‑101 (MQ=255)
                                                                  tCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAtagatcg                               >  2:250363/1‑95 (MQ=255)
                                                                  tCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                               <  2:69173/101‑1 (MQ=255)
                                                                     tttGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCa                            <  1:1444344/101‑1 (MQ=255)
                                                                     tttGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCa                            <  1:1341259/101‑1 (MQ=255)
                                                                       tGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc                          <  1:934519/101‑1 (MQ=255)
                                                                          aaCTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAt                       >  1:520572/1‑101 (MQ=255)
                                                                            cTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAttt                     >  2:1586869/1‑101 (MQ=255)
                                                                              ggTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTg                   >  1:680066/1‑101 (MQ=255)
                                                                                ttCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgag                 <  1:1098728/101‑1 (MQ=255)
                                                                                  ccGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa               <  1:1621398/101‑1 (MQ=255)
                                                                                   cGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc              >  1:1692696/1‑101 (MQ=255)
                                                                                   cGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc              >  1:1091717/1‑101 (MQ=255)
                                                                                     atcatcAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGa            <  1:1185658/101‑1 (MQ=255)
                                                                                      tcatcaGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc           >  1:335306/1‑101 (MQ=40)
                                                                                       catcaGGTTGTAGGTAATGACTCCAACTTATTGATAGTTTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACa          <  2:251581/101‑1 (MQ=255)
                                                                                        atcaGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg         >  1:871897/1‑101 (MQ=38)
                                                                                        atcaGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg         >  1:1358322/1‑101 (MQ=38)
                                                                                               tGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc  <  1:1105189/101‑1 (MQ=31)
                                                                                               tGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc  >  1:132907/1‑101 (MQ=31)
                                                                                                   |                                                                                                
TATTGTAGTGAAAACGCCAGGAGTGCTTCAGCGTGGTTTGAAAGCAGTAAAGCTATCATGGCAGAATCATTTGCAACTGGTTCCGATCATCAGGTTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTC  >  REL606/2407343‑2407538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.