| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 18002 = | 1 (0.020) | 63 (0.980) | 52/200 | 0.2 | 98.4% | coding (515/1167 nt) | nhaA | pH‑dependent sodium/proton antiporter |
| ? | REL606 | 588495 = | NA (NA) | noncoding (1/1977 nt) | IS150 | repeat region | |||||
GTGCTGGCGCTGTTGGGAAGTCGTGTTCCGTTAGCGCTGAAGATCTTTTTGATGGCTCTGGCTATTATCGACGATCTTGGGGCCATCATTATCATCGCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCAC > REL606/17905‑18101 | tgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCAtt < 2:118657‑M1/4‑1 (MQ=255)tgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCAtt < 2:1374615‑M1/4‑1 (MQ=255) ttcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGtt > 1:1192606‑M1/95‑101 (MQ=255) tcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTc > 1:733313‑M1/94‑101 (MQ=255) tcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTc < 2:1266778‑M1/8‑1 (MQ=255) tcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTc > 1:1594491‑M1/94‑101 (MQ=255) cacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCt > 2:653749‑M1/93‑101 (MQ=255) acgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTa > 2:1583413‑M1/92‑101 (MQ=255) cttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACt < 1:909551‑M1/14‑1 (MQ=255) aggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGa < 2:901426‑M1/19‑1 (MQ=255) gcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACt < 1:75362‑M1/21‑1 (MQ=255) gcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTa > 1:68445‑M1/79‑101 (MQ=255) cttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTAt < 1:1507034‑M1/24‑1 (MQ=255) ttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATc > 1:1233818‑M1/77‑101 (MQ=255) tcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGAt > 1:299299‑M1/74‑101 (MQ=255) caaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATg > 1:81202‑M1/73‑101 (MQ=255) aaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGc > 1:1473044‑M1/71‑101 (MQ=255) aaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGc < 2:1226944‑M1/31‑1 (MQ=255) aagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGcc < 2:610875‑M1/32‑1 (MQ=255) ggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctct > 2:1442967‑M1/67‑101 (MQ=255) gtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctctc < 1:212812‑M1/36‑1 (MQ=255) attttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt < 1:777957‑M1/38‑1 (MQ=255) attttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt > 1:1288780‑M1/64‑101 (MQ=255) ttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGc > 2:900321‑M1/61‑101 (MQ=255) ttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGc < 2:1070101‑M1/41‑1 (MQ=255) tttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTcgc < 2:1677130‑M1/46‑1 (MQ=255) ttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTcgcg < 1:1071344‑M1/47‑1 (MQ=255) ttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTcgcg > 1:693827‑M1/55‑101 (MQ=255) tgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCgg < 1:1134760‑M1/48‑1 (MQ=255) tgacatattaggggctattccatttaatcgtccaacaaaatgggtgcaggacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCgg < 2:941921‑M1/48‑1 (MQ=255) gacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGc > 1:901431‑M1/53‑101 (MQ=255) atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGt > 1:953173‑M1/50‑101 (MQ=255) atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGt < 1:794869‑M1/52‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCa < 1:1498444‑M1/56‑1 (MQ=255) gggcctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAAt > 2:508246‑M1/44‑101 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGCCTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAAtt > 1:1328628‑M1/43‑101 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCgg < 1:743056‑M1/63‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCgg < 2:1087174‑M1/63‑1 (MQ=255) cTATTATCGACGATCTTGGGGCCATCATTATCATCGCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTa > 1:1292609/1‑101 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACt < 2:459597‑M1/67‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTcg > 1:1511919‑M1/33‑101 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTcgcg < 1:755394‑M1/71‑1 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCgg < 1:1613343‑M1/72‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTAtt > 1:609262‑M1/26‑101 (MQ=255) gtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTg < 1:842233‑M1/77‑1 (MQ=255) tccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGa < 2:1201158‑M1/78‑1 (MQ=255) ccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGaa < 1:1693833‑M1/79‑1 (MQ=255) ccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGaa < 1:134617‑M1/79‑1 (MQ=255) caacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAAt > 2:75362‑M1/22‑101 (MQ=255) aacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATc > 1:329078‑M1/21‑101 (MQ=255) aacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATc > 2:115050‑M1/21‑101 (MQ=255) aacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATc < 1:1459750‑M1/81‑1 (MQ=255) acaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCt < 2:235092‑M1/82‑1 (MQ=255) acaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCt < 1:100815‑M1/82‑1 (MQ=255) atgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCtgtgtg > 2:777952‑M1/15‑101 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTAc > 1:162675‑M1/9‑101 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTAc > 1:1266783‑M1/9‑101 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTAc > 1:118657‑M1/9‑101 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCCGTATTGAATCTGTGTGGTGTAc > 2:149515‑M1/9‑101 (MQ=255) cagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTAcg < 1:1525178‑M1/94‑1 (MQ=255) tacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTAcgccg > 2:441986‑M1/5‑101 (MQ=255) caCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCa < 2:241050‑M1/99‑1 (MQ=255) aCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCAc < 1:1549172‑M1/100‑1 (MQ=255) aCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCAc < 2:1086007‑M1/100‑1 (MQ=255) | GTGCTGGCGCTGTTGGGAAGTCGTGTTCCGTTAGCGCTGAAGATCTTTTTGATGGCTCTGGCTATTATCGACGATCTTGGGGCCATCATTATCATCGCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCAC > REL606/17905‑18101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |