New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	18002 =	1 (0.020)	63 (0.980)	52/200	0.2	98.4%	coding (515/1167 nt)	nhaA	pH‑dependent sodium/proton antiporter
	?	REL606	588495 =	NA (NA)					noncoding (1/1977 nt)	IS150	repeat region

CTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  >  REL606/588402‑588592                                                                                                |                                                                                                  cTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACt                                                                                              >  1:1071524/1‑101 (MQ=255) cTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACt                                                                                              >  2:386056/1‑101 (MQ=255)  ttttGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTg                                                                                             <  2:456947/101‑1 (MQ=255)  ttttGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTg                                                                                             <  1:141075/101‑1 (MQ=255)      gCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAcc                                                                                         <  2:1143427/101‑1 (MQ=255)            tgACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAtttt                                                                                   <  2:223293/101‑1 (MQ=255)             gACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttg                                                                                  >  2:45135/1‑101 (MQ=255)                 aGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTgg                                                                              <  2:1325004/101‑1 (MQ=255)                  gTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGa                                                                             >  2:480836/1‑101 (MQ=255)                   ttATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGAc                                                                            <  2:282955/101‑1 (MQ=255)                    tATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACg                                                                           >  1:260713/1‑101 (MQ=255)                     aTGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGa                                                                          >  2:1069464/1‑101 (MQ=255)                      tGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGAt                                                                         <  1:516656/101‑1 (MQ=255)                      tGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGAt                                                                         >  1:796551/1‑101 (MQ=255)                       ggCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATg                                                                        <  2:50687/101‑1 (MQ=255)                           gTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAAt                                                                    >  2:1608150/1‑101 (MQ=255)                           atGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAATAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAAt                                                                    <  1:1689166/100‑1 (MQ=38)                              cTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGa                                                                 >  2:64776/1‑101 (MQ=255)                               tGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa                                                                <  1:993538/101‑1 (MQ=255)                                gACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt                                                               <  1:494039/101‑1 (MQ=255)                                gACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt                                                               <  1:635589/101‑1 (MQ=255)                                gACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt                                                               <  2:1071519/101‑1 (MQ=255)                                gACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt                                                               <  2:593399/101‑1 (MQ=255)                                 aCTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa                                                              >  1:755916/1‑101 (MQ=255)                                 aCTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa                                                              <  1:110053/101‑1 (MQ=255)                                      tggCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc                                                         <  1:1114907/101‑1 (MQ=255)                                       ggCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGAGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt                                                        <  1:4459/101‑1 (MQ=25)                                        gCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa                                                       >  2:322804/1‑101 (MQ=255)                                        gCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa                                                       >  2:1200857/1‑101 (MQ=255)                                           aagaaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata                                                    <  1:265244/101‑1 (MQ=255)                                            agaaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat                                                   <  1:706575/101‑1 (MQ=255)                                            agaaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat                                                   <  2:129529/101‑1 (MQ=255)                                            agaaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat                                                   <  1:1608156/101‑1 (MQ=255)                                              aaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGt                                                 <  2:260713/101‑1 (MQ=255)                                                ttttGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCa                                               <  1:1586390/101‑1 (MQ=255)                                                 tttGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaa                                              <  1:1707825/101‑1 (MQ=255)                                                  ttGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaaa                                             >  2:1491358/1‑101 (MQ=255)                                                  ttGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaaa                                             <  1:1561171/101‑1 (MQ=255)                                                   tGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAg                                            <  1:537846/101‑1 (MQ=255)                                                    gACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGc                                           >  2:752190/1‑101 (MQ=255)                                                    caCGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTTCTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGc                                           <  1:1136370/100‑1 (MQ=21)                                                       gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaa                                        >  2:526209/1‑101 (MQ=255)                                                       gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaa                                        <  1:348501/101‑1 (MQ=255)                                                         ttGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa                                      >  1:1644016/1‑101 (MQ=255)                                                         ttGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa                                      <  1:1123274/101‑1 (MQ=255)                                                         ttGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa                                      <  2:340584/101‑1 (MQ=255)                                                          tGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAt                                     <  2:750352/101‑1 (MQ=255)                                                             gTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAcc                                  <  2:1214981/101‑1 (MQ=255)                                                               cATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCt                                <  2:1004170/101‑1 (MQ=255)                                                                aTGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                               >  1:1657168/1‑101 (MQ=255)                                                                aTGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                               >  2:1141109/1‑101 (MQ=255)                                                                aTGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                               >  1:449146/1‑101 (MQ=255)                                                                  gCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                             >  2:544281/1‑101 (MQ=255)                                                                    aGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGa                           <  1:111760/101‑1 (MQ=255)                                                                        aaaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAg                       >  2:495303/1‑101 (MQ=255)                                                                         aaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc                      >  2:105975/1‑101 (MQ=255)                                                                           aaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgcgc                    <  1:1278006/101‑1 (MQ=255)                                                                              gggTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCtt                 <  2:417472/101‑1 (MQ=255)                                                                                 ttCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGaa              >  2:670744/1‑101 (MQ=255)                                                                                 ttCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGaa              >  2:1247734/1‑101 (MQ=255)                                                                                  tCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAg             >  2:762206/1‑101 (MQ=255)                                                                                     gcttcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGGATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCg          >  1:1717742/8‑101 (MQ=255)                                                                                      cttcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGt         >  2:918434/7‑101 (MQ=12)                                                                                      cttcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGt         <  1:81407/95‑1 (MQ=12)                                                                                       ttcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTg        >  1:1574053/6‑101 (MQ=17)                                                                                       ttcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTg        <  2:67262/96‑1 (MQ=17)                                                                                        tcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGa       >  1:1025884/5‑101 (MQ=17)                                                                                        tcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGa       <  1:311887/97‑1 (MQ=17)                                                                                         c‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATc    >  1:211017/1‑101 (MQ=33)                                                                                           aaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATc    <  1:1141114/100‑1 (MQ=17)                                                                                           aaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATc    >  2:374721/2‑101 (MQ=17)                                                                                            aaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCa   >  1:1393144/1‑101 (MQ=32)                                                                                            aaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCa   >  1:1090597/1‑101 (MQ=32)                                                                                             aGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac  <  1:526214/101‑1 (MQ=31)                                                                                             aGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCac  >  2:277280/1‑101 (MQ=31)                                                                                                |                                                                                                  CTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCAC  >  REL606/588402‑588592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.