| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | REL606 | 929,574 | IS150 (+) +3 bp | 100% | coding (946‑948/1653 nt) | hcp ← | hydroxylamine reductase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 666130 | NA (NA) | 84 (0.930) | 51/76 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 929574 = | 0 (0.000) | coding (948/1653 nt) | hcp | hydroxylamine reductase | |||||
| * | ? | REL606 | = 929576 | 0 (0.000) | 75 (0.790) | 49/80 | NT | 100% | coding (946/1653 nt) | hcp | hydroxylamine reductase |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 224 total aligned reads displayed.
GGTCCAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGAT > REL606/929526‑929626 | ggTCCAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGtt > 1:10722839/1‑51 (MQ=255)ggTCCAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGtt > 1:8318881/1‑51 (MQ=255)gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGtt < 1:5196348‑M2/3‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTc < 1:5563828‑M2/4‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTc < 1:1265372‑M2/4‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTc < 1:7314963‑M2/4‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCg < 1:3624546‑M2/5‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCg > 1:2772029‑M2/47‑51 (MQ=255) ccAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgt > 1:2289857‑M1/1‑48 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAg > 1:1821467‑M2/45‑51 (MQ=255) cAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgta > 1:9858168‑M1/1‑47 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAgg > 1:10762995‑M2/44‑51 (MQ=255) aGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtac > 1:9944815‑M1/1‑46 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtc < 1:4782569‑M2/10‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtc > 1:5103565‑M2/42‑51 (MQ=255) aTACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactg < 1:6910652‑M1/51‑8 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtca < 1:7967451‑M2/11‑1 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtca > 1:3548268‑M2/41‑51 (MQ=255) tACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgc < 1:3105733‑M1/51‑9 (MQ=255) aCGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgca < 1:1375705‑M1/51‑10 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtcatca > 1:5750520‑M2/38‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGtcatca < 1:2635198‑M2/14‑1 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCAc < 1:6592837‑M2/15‑1 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCAc < 1:6564919‑M2/15‑1 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACg > 1:7488945‑M2/36‑51 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACg > 1:9036122‑M2/36‑51 (MQ=255) cGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccat > 1:8029347‑M1/1‑37 (MQ=255) tgtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGAt > 1:10697992‑M2/34‑51 (MQ=255) gTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccatt > 1:654290‑M1/1‑36 (MQ=255) tCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattt < 1:8576536‑M1/51‑17 (MQ=255) gtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATg < 1:844560‑M2/19‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATg > 1:2754867‑M2/33‑51 (MQ=255) gtttaactgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATg > 1:367530‑M2/33‑51 (MQ=255) tttaactgtccaactttttggggtcagtataGTTCGAGGTCATCACGATgg > 1:5868659‑M2/32‑51 (MQ=255) tAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgt < 1:3395432‑M1/51‑20 (MQ=255) tAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgt < 1:6656795‑M1/51‑20 (MQ=255) tAAGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgt > 1:5282923‑M1/1‑32 (MQ=255) aaGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgtt < 1:4421427‑M1/51‑21 (MQ=255) aaGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgtt < 1:1827403‑M1/51‑21 (MQ=255) actgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGcc < 1:10462209‑M2/24‑1 (MQ=255) actgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGcc > 1:2500087‑M2/28‑51 (MQ=255) actgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGcc > 1:10567924‑M2/28‑51 (MQ=255) aGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttg < 1:10001023‑M1/51‑22 (MQ=255) aGCGCCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttg < 1:9084774‑M1/51‑22 (MQ=255) gcgcCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttgg < 1:3764822‑M1/51‑23 (MQ=255) gcgcCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttgg < 1:6310741‑M1/51‑23 (MQ=255) tgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAg > 1:787087‑M2/26‑51 (MQ=255) tgtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAg < 1:4318198‑M2/26‑1 (MQ=255) gtccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAgg > 1:10182696‑M2/25‑51 (MQ=255) gcCTACGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttggac < 1:7236225‑M1/51‑25 (MQ=255) tccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAggg < 1:7843923‑M2/28‑1 (MQ=255) ccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGa < 1:6191947‑M2/29‑1 (MQ=255) ccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGa < 1:703693‑M2/29‑1 (MQ=255) ccaactttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGa < 1:4622690‑M2/29‑1 (MQ=255) cGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttggacgatga < 1:8308682‑M1/51‑30 (MQ=255) cGGTTGGGTCGATGATGCAGTTtgtactgcacccattttgttggacgatga > 1:1416912‑M1/1‑22 (MQ=255) actttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAAc < 1:7653676‑M2/32‑1 (MQ=255) ggTTGGGTCGATGATGCAGTTtgtactgcacccattttgttggacgatgaa > 1:5013767‑M1/1‑21 (MQ=255) ctttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACg < 1:6422160‑M2/33‑1 (MQ=255) tttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGa > 1:6207261‑M2/18‑51 (MQ=255) ttttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAg < 1:4664185‑M2/35‑1 (MQ=255) ttGGGTCGATGATGCAGTTtgtactgcacccattttgttggacgatgaaat < 1:7738643‑M1/51‑33 (MQ=255) tttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGc < 1:9748151‑M2/36‑1 (MQ=255) tttggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGc < 1:3944789‑M2/36‑1 (MQ=255) ggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGaa < 1:5524223‑M2/39‑1 (MQ=255) ggggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGaa > 1:9273161‑M2/13‑51 (MQ=255) ggtcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACt > 1:2617218‑M2/11‑51 (MQ=255) cGATGATGCAGTTtgtactgcacccattttgttggacgatgaaatggaata < 1:4679461‑M1/51‑39 (MQ=255) gatgatGCAGTTtgtactgcacccattttgttggacgatgaaatggaatag > 1:9213933‑M1/1‑12 (MQ=255) tcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACt > 1:1203487‑M2/9‑49 (MQ=255) tcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTcc > 1:4351299‑M2/9‑51 (MQ=255) tcagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTcc > 1:6938184‑M2/9‑51 (MQ=255) atgatgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagc > 1:5253863‑M1/1‑11 (MQ=255) atgatgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagc > 1:8632702‑M1/1‑11 (MQ=255) atgatgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagc > 1:10362773‑M1/1‑11 (MQ=255) tgatgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagcc > 1:8836535‑M1/1‑10 (MQ=255) cagtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCa > 1:2924079‑M2/8‑51 (MQ=255) agtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCAc > 1:3990362‑M2/7‑51 (MQ=255) agtacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCAc > 1:7809175‑M2/7‑51 (MQ=255) atgCAGTTtgtactgcacccattttgttggacgatgaaatggaatagcccc < 1:2095519‑M1/51‑44 (MQ=255) tacaGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACtt < 1:682656‑M2/47‑1 (MQ=255) gCAGTTtgtactgcacccattttgttggacgatgaaatggaatagccccta > 1:4123191‑M1/1‑6 (MQ=255) gCAGTTtgtactgcacccattttgttggacgatgaaatggaatagccccta < 1:7512312‑M1/51‑46 (MQ=255) caGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGc > 1:8216039‑M2/3‑51 (MQ=255) caGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGc > 1:241681‑M2/3‑51 (MQ=255) cAGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaa < 1:1639203‑M1/51‑47 (MQ=255) cAGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaa < 1:6099884‑M1/51‑47 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat > 1:7125489‑M1/1‑4 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat < 1:322177‑M1/51‑48 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat > 1:721324‑M1/1‑4 (MQ=255) aGTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat < 1:3682308‑M1/51‑48 (MQ=255) aGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCt > 1:10815491‑M2/2‑51 (MQ=255) aGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCt < 1:307903‑M2/50‑1 (MQ=255) aGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCt > 1:5157879‑M2/2‑51 (MQ=255) gTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaata > 1:8701822‑M1/1‑3 (MQ=255) gTTtgtactgcacccattttgttggacgatgaaatggaatagcccctaata < 1:9368681‑M1/51‑49 (MQ=255) gTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTg > 1:6353537/1‑51 (MQ=255) ttCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGa > 1:2539798/1‑51 (MQ=255) ttCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGa > 1:6404045/1‑51 (MQ=255) tCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGAt > 1:494364/1‑51 (MQ=255) | GGTCCAGATACGATCGTCATAAGCGCCTACGGTTGGGTCGATGATGCAGTTCGAGGTCATCACGATGGGGCCAGGGAAACGAGCGAACTCCACTTGCTGAT > REL606/929526‑929626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |