New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 18002 = | 0 (0.000) | 97 (1.020) | 54/80 | NT | 100% | coding (515/1167 nt) | nhaA | pH‑dependent sodium/proton antiporter |
? | REL606 | 588495 = | NA (NA) | noncoding (1/1977 nt) | IS150 | repeat region |
Only 100 of 110 total aligned reads displayed.
ATGGCTCTGGCTATTATCGACGATCTTGGGGCCATCATTATCATCGCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCT > REL606/17956‑18051 | ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTg > 1:8153248‑M1/47‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGt < 1:10472194‑M1/6‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGt > 1:2840853‑M1/46‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGtt > 1:4046259‑M1/45‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGtt > 1:5729368‑M1/45‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGtt > 1:6473989‑M1/45‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGtt > 1:8303043‑M1/45‑51 (MQ=255) ggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTa > 1:9671556‑M1/42‑51 (MQ=255) ggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTa < 1:10280112‑M1/10‑1 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTac > 1:4746362‑M1/41‑51 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTaca > 1:7777995‑M1/40‑51 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTacac < 1:7388857‑M1/13‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTacac > 1:6315713‑M1/39‑51 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTacac < 1:706233‑M1/13‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTacac < 1:5607464‑M1/13‑1 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACt > 1:10717968‑M1/38‑51 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACt < 1:1897916‑M1/14‑1 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACt < 1:10296635‑M1/14‑1 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTa > 1:4771664‑M1/37‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTa < 1:10707245‑M1/15‑1 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTa < 1:10910566‑M1/15‑1 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTa < 1:6244151‑M1/15‑1 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTaa > 1:9808111‑M1/36‑51 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTaa < 1:692623‑M1/16‑1 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTaa < 1:10163340‑M1/16‑1 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTaa > 1:7224218‑M1/36‑51 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTaa < 1:7776663‑M1/16‑1 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAAt > 1:5445771‑M1/35‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATg < 1:4613610‑M1/18‑1 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATg < 1:3237715‑M1/18‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGa > 1:6419578‑M1/33‑51 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGa < 1:6909003‑M1/19‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGa < 1:468826‑M1/19‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGa > 1:2261168‑M1/33‑51 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGAc > 1:3735482‑M1/32‑51 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGAc < 1:9177007‑M1/20‑1 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGAc < 1:9572905‑M1/20‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACt < 1:6406224‑M1/21‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACt < 1:5800155‑M1/21‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACt < 1:8762880‑M1/21‑1 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaTATTGTTCTACACTAATGACtt > 1:7045498‑M1/30‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACtt > 1:4449971‑M1/30‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACtt < 1:6850855‑M1/22‑1 (MQ=255) catcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTa < 1:10684033‑M1/23‑1 (MQ=255) catcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTa < 1:9617011‑M1/23‑1 (MQ=255) atcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTAt > 1:3757464‑M1/28‑51 (MQ=255) atcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTAt > 1:10469065‑M1/28‑51 (MQ=255) tcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATc < 1:4790929‑M1/25‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCg > 1:3149095‑M1/26‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCg > 1:952966‑M1/26‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCg > 1:5368504‑M1/26‑51 (MQ=255) gtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGa < 1:5121930‑M1/27‑1 (MQ=255) tccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGAt < 1:82956‑M1/28‑1 (MQ=255) tccaacaaaatgggtgcagtacaCATTGTTCCACACTAATGACTTATCGAt < 1:5786359‑M1/28‑1 (MQ=255) ccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATg > 1:4312539‑M1/23‑51 (MQ=255) ccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATg > 1:7108468‑M1/23‑51 (MQ=255) ccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATg > 1:4080227‑M1/23‑51 (MQ=255) caacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATgg > 1:4006197‑M1/22‑51 (MQ=255) caacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATgg < 1:4193978‑M1/30‑1 (MQ=255) caacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATgg < 1:3349240‑M1/30‑1 (MQ=255) caaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCct < 1:3114566‑M1/33‑1 (MQ=255) caaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCct > 1:2881537‑M1/19‑51 (MQ=255) caaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCct < 1:73581‑M1/33‑1 (MQ=255) caaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCct > 1:7507668‑M1/19‑51 (MQ=255) aaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATTGATGGCctc > 1:5888895‑M1/18‑51 (MQ=255) aaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctct < 1:5153194‑M1/35‑1 (MQ=255) aaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctct < 1:5212489‑M1/35‑1 (MQ=255) aaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctct < 1:558243‑M1/35‑1 (MQ=255) aatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctctc < 1:8701651‑M1/36‑1 (MQ=255) atgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctctct < 1:4401352‑M1/37‑1 (MQ=255) tgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt > 1:5691278‑M1/14‑51 (MQ=255) tgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt < 1:8098479‑M1/38‑1 (MQ=255) tgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt > 1:4070530‑M1/14‑51 (MQ=255) tgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt > 1:2538871‑M1/14‑51 (MQ=255) tgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt < 1:8706205‑M1/38‑1 (MQ=255) tgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt < 1:8957867‑M1/38‑1 (MQ=255) gggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTg < 1:215773‑M1/39‑1 (MQ=255) ggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTgg > 1:9490412‑M1/12‑51 (MQ=255) ggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTg < 1:5871268‑M1/39‑1 (MQ=255) gtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGc > 1:6895784‑M1/11‑51 (MQ=255) gtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGc > 1:373434‑M1/11‑51 (MQ=255) tgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCg < 1:753838‑M1/42‑1 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGt > 1:2007798‑M1/9‑51 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGt < 1:1036025‑M1/43‑1 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGt > 1:9630782‑M1/9‑51 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGt > 1:8760929‑M1/9‑51 (MQ=255) cagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTc < 1:8764058‑M1/44‑1 (MQ=255) cagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTc > 1:8514713‑M1/8‑51 (MQ=255) cagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTc > 1:3031532‑M1/8‑51 (MQ=255) cagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTc > 1:3378579‑M1/8‑51 (MQ=255) gtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTcgc > 1:10372676‑M1/6‑51 (MQ=255) gtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTcgc < 1:5730205‑M1/46‑1 (MQ=255) gtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTc < 1:2508305‑M1/44‑1 (MQ=255) tacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTcgcg > 1:158461‑M1/5‑51 (MQ=255) acaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCgg < 1:1745469‑M1/48‑1 (MQ=255) acaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCgg > 1:3468999‑M1/4‑51 (MQ=255) caCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGc < 1:9067070‑M1/49‑1 (MQ=255) caCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGc < 1:3217304‑M1/49‑1 (MQ=255) aCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCt < 1:6936591‑M1/50‑1 (MQ=255) aCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCt > 1:178576‑M1/2‑51 (MQ=255) | ATGGCTCTGGCTATTATCGACGATCTTGGGGCCATCATTATCATCGCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCT > REL606/17956‑18051 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |