New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 18002 =0 (0.000)97 (1.020) 54/80 NT 100% coding (515/1167 nt) nhaA pH‑dependent sodium/proton antiporter
?REL606 588495 = NA (NA)noncoding (1/1977 nt) IS150 repeat region

Only 100 of 110 total aligned reads displayed.

AGCCGCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/18051‑18002
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT  >  REL606/588495‑588541
                                                                                                 
AGCCGCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGT                                                >  1:178576/1‑51
AGCCGCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGT                                                <  1:6936591/51‑1
 GCCGCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTG                                               <  1:3217304/51‑1
 GCCGCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTG                                               <  1:9067070/51‑1
  CCGCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGT                                              >  1:3468999/1‑51
  CCGCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGT                                              <  1:1745469/51‑1
   CGCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTA                                             >  1:158461/1‑51
    GCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTAC                                            <  1:5730205/51‑1
    GCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTAC                                            >  1:10372676/1‑51
      GACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTG                                          <  1:8764058/51‑1
      GACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTG                                          >  1:3031532/1‑51
      GACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTG                                          >  1:8514713/1‑51
      GACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTG                                          >  1:3378579/1‑51
      GACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTAC                                            <  1:2508305/49‑1
       ACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGC                                         >  1:8760929/1‑51
       ACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGC                                         >  1:2007798/1‑51
       ACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGC                                         >  1:9630782/1‑51
       ACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGC                                         <  1:1036025/51‑1
        CGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCA                                        <  1:753838/51‑1
         GCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCAC                                       >  1:373434/1‑51
         GCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCAC                                       >  1:6895784/1‑51
          CCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACC                                      >  1:9490412/1‑51
           CAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCC                                     <  1:215773/51‑1
           CAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACC                                      <  1:5871268/50‑1
            AAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCA                                    <  1:8098479/51‑1
            AAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCA                                    <  1:8957867/51‑1
            AAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCA                                    >  1:2538871/1‑51
            AAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCA                                    <  1:8706205/51‑1
            AAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCA                                    >  1:5691278/1‑51
            AAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCA                                    >  1:4070530/1‑51
             AGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCAT                                   <  1:4401352/51‑1
              GAGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATT                                  <  1:8701651/51‑1
               AGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTT                                 <  1:5212489/51‑1
               AGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTT                                 <  1:5153194/51‑1
               AGAGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTT                                 <  1:558243/51‑1
                GAGGCCATCAATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTT                                >  1:5888895/1‑51
                 AGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTG                               <  1:73581/51‑1
                 AGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTG                               <  1:3114566/51‑1
                 AGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTG                               >  1:7507668/1‑51
                 AGGCCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTG                               >  1:2881537/1‑51
                    CCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTG                            <  1:4193978/51‑1
                    CCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTG                            <  1:3349240/51‑1
                    CCATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTG                            >  1:4006197/1‑51
                     CATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGG                           >  1:7108468/1‑51
                     CATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGG                           >  1:4080227/1‑51
                     CATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGG                           >  1:4312539/1‑51
                      ATCGATAAGTCATTAGTGTGGAACAATGTGTACTGCACCCATTTTGTTGGA                          <  1:5786359/51‑1
                      ATCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGA                          <  1:82956/51‑1
                       TCGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGAC                         <  1:5121930/51‑1
                        CGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACG                        >  1:5368504/1‑51
                        CGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACG                        >  1:952966/1‑51
                        CGATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACG                        >  1:3149095/1‑51
                         GATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGA                       <  1:4790929/51‑1
                          ATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGAT                      >  1:3757464/1‑51
                          ATAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGAT                      >  1:10469065/1‑51
                           TAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATG                     <  1:9617011/51‑1
                           TAAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATG                     <  1:10684033/51‑1
                            AAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGA                    >  1:4449971/1‑51
                            AAGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGA                    <  1:6850855/51‑1
                            AAGTCATTAGTGTAGAACAATATGTACTGCACCCATTTTGTTGGACGATGA                    >  1:7045498/1‑51
                             AGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAA                   <  1:5800155/51‑1
                             AGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAA                   <  1:8762880/51‑1
                             AGTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAA                   <  1:6406224/51‑1
                              GTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAA                  >  1:3735482/1‑51
                              GTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAA                  <  1:9177007/51‑1
                              GTCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAA                  <  1:9572905/51‑1
                               TCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAAT                 >  1:6419578/1‑51
                               TCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAAT                 <  1:6909003/51‑1
                               TCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAAT                 >  1:2261168/1‑51
                               TCATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAAT                 <  1:468826/51‑1
                                CATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATG                <  1:3237715/51‑1
                                CATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATG                <  1:4613610/51‑1
                                 ATTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGG               >  1:5445771/1‑51
                                  TTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGA              >  1:7224218/1‑51
                                  TTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGA              >  1:9808111/1‑51
                                  TTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGA              <  1:10163340/51‑1
                                  TTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGA              <  1:692623/51‑1
                                  TTAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGA              <  1:7776663/51‑1
                                   TAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA             >  1:4771664/1‑51
                                   TAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA             <  1:10910566/51‑1
                                   TAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA             <  1:10707245/51‑1
                                   TAGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA             <  1:6244151/51‑1
                                    AGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT            <  1:10296635/51‑1
                                    AGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT            <  1:1897916/51‑1
                                    AGTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT            >  1:10717968/1‑51
                                     GTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA           >  1:6315713/1‑51
                                     GTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA           <  1:5607464/51‑1
                                     GTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA           <  1:7388857/51‑1
                                     GTGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA           <  1:706233/51‑1
                                      TGTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG          >  1:7777995/1‑51
                                       GTAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC         >  1:4746362/1‑51
                                        TAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC        <  1:10280112/51‑1
                                        TAGAACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC        >  1:9671556/1‑51
                                           AACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT     >  1:4046259/1‑51
                                           AACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT     >  1:8303043/1‑51
                                           AACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT     >  1:6473989/1‑51
                                           AACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT     >  1:5729368/1‑51
                                            ACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA    >  1:2840853/1‑51
                                            ACAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA    <  1:10472194/51‑1
                                             CAATGTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA   >  1:8153248/1‑51
                                                                                                 
AGCCGCGACGCCAAGAGAGGCCATCGATAAGTCATTAGTGTAGAACAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/18051‑18002
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT  >  REL606/588495‑588541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.