New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 16974 | 0 (0.000) | 85 (0.940) | 53/76 | NT | 100% | intergenic (‑16/‑514) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region |
Only 100 of 125 total aligned reads displayed.
CGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAA > REL606/16924‑17023 | cGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGt < 1:9764707/51‑1 (MQ=255) cGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGt > 1:10118917/1‑51 (MQ=255) ggTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTt < 1:176623‑M1/51‑2 (MQ=255) gTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtg > 1:4193822‑M1/1‑49 (MQ=255) tCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgt < 1:8999844‑M1/51‑4 (MQ=255) tCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgt > 1:5323465‑M1/1‑48 (MQ=255) tCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgt > 1:5989096‑M1/1‑48 (MQ=255) cAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgta > 1:1336212‑M1/1‑47 (MQ=255) cAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgta > 1:9289479‑M1/1‑47 (MQ=255) aGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac > 1:7641410‑M1/1‑46 (MQ=255) aGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac > 1:3197747‑M1/1‑46 (MQ=255) gTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtact < 1:1605510‑M1/51‑7 (MQ=255) tAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg > 1:8146598‑M1/1‑44 (MQ=255) tAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg > 1:1751578‑M1/1‑44 (MQ=255) tAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg < 1:5485048‑M1/51‑8 (MQ=255) aaGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactga > 1:7764242‑M1/1‑43 (MQ=255) aaGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactga > 1:5120035‑M1/1‑43 (MQ=255) aaGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactga > 1:7086843‑M1/1‑43 (MQ=255) agagGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgac > 1:2892050‑M1/1‑42 (MQ=255) gagGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgacc > 1:1668408‑M1/1‑41 (MQ=255) gagGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgacc > 1:8725966‑M1/1‑41 (MQ=255) agGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccc > 1:4414341‑M1/1‑40 (MQ=255) gCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgacccca < 1:2434733‑M1/51‑14 (MQ=255) gCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgacccca > 1:9408634‑M1/1‑38 (MQ=255) cACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaa > 1:9095115‑M1/1‑37 (MQ=255) cACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaa < 1:10816015‑M1/51‑15 (MQ=255) aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaa > 1:2034469‑M1/1‑36 (MQ=255) aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaa > 1:7361861‑M1/1‑36 (MQ=255) aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaa > 1:7422697‑M1/1‑36 (MQ=255) ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaana < 1:67997‑M1/51‑17 (MQ=255) ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaa > 1:6596326‑M1/1‑35 (MQ=255) tctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaa < 1:3725290‑M1/51‑18 (MQ=255) tctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaa > 1:2216265‑M1/1‑34 (MQ=255) tctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaa > 1:8531344‑M1/1‑34 (MQ=255) ctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaag > 1:5016249‑M1/1‑33 (MQ=255) ctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaag < 1:6092822‑M1/51‑19 (MQ=255) tACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagt > 1:4645002‑M1/1‑32 (MQ=255) cATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttg > 1:5817789‑M1/1‑30 (MQ=255) cATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttg > 1:10083464‑M1/1‑30 (MQ=255) tgtgTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttgga > 1:7066337‑M1/1‑28 (MQ=255) gtgtTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggac > 1:2220849‑M1/1‑27 (MQ=255) tgtTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggaca < 1:8572890‑M1/51‑26 (MQ=255) tgtTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggaca > 1:246320‑M1/1‑26 (MQ=255) gtTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacag > 1:276559‑M1/1‑25 (MQ=255) gtTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggaca < 1:5606207‑M1/50‑26 (MQ=255) tCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagtt > 1:4116632‑M1/1‑23 (MQ=255) tCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagtt > 1:7551162‑M1/1‑23 (MQ=255) cAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagtta < 1:5943639‑M1/51‑30 (MQ=255) cAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagtta < 1:7354087‑M1/51‑30 (MQ=255) cAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagtta < 1:2398775‑M1/51‑30 (MQ=255) cAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagtta > 1:2946194‑M1/1‑22 (MQ=255) aGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaa < 1:10235998‑M1/51‑31 (MQ=255) aGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaa > 1:3427755‑M1/1‑21 (MQ=255) aGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaa > 1:5599852‑M1/1‑21 (MQ=255) gCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaa < 1:6221948‑M1/51‑32 (MQ=255) cATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaac < 1:2422622‑M1/51‑33 (MQ=255) cATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaac > 1:8581190‑M1/1‑19 (MQ=255) cATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaac > 1:5839960‑M1/1‑19 (MQ=255) cATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaac < 1:4257411‑M1/51‑33 (MQ=255) atatAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaana < 1:2106667‑M1/51‑34 (MQ=255) atatAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaaca < 1:10059291‑M1/51‑34 (MQ=255) atatAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaaca > 1:148937‑M1/1‑18 (MQ=255) atatAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaaca > 1:1489958‑M1/1‑18 (MQ=255) atatAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaaca < 1:3478615‑M1/51‑34 (MQ=255) atatAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaaca > 1:1543175‑M1/1‑18 (MQ=255) tataGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacac < 1:2995240‑M1/51‑35 (MQ=255) tataGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacac < 1:7616801‑M1/51‑35 (MQ=255) ataGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacg < 1:7515087‑M1/51‑36 (MQ=255) ataGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaa > 1:6640044‑M1/1‑16 (MQ=255) ataGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaa > 1:891605‑M1/1‑16 (MQ=255) taGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacga < 1:192366‑M1/51‑37 (MQ=255) taGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacga > 1:8110944‑M1/1‑15 (MQ=255) taGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacga > 1:400007‑M1/1‑15 (MQ=255) aGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgag < 1:3404496‑M1/51‑38 (MQ=255) aGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgag > 1:665343‑M1/1‑14 (MQ=255) gggggCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgagg > 1:626840‑M1/1‑13 (MQ=255) ggggCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggc < 1:7187195‑M1/51‑40 (MQ=255) ggCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcat > 1:583960‑M1/1‑10 (MQ=255) ccTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatat < 1:9589289‑M1/51‑44 (MQ=255) cTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:10720310‑M1/1‑7 (MQ=255) cTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:1431312‑M1/1‑7 (MQ=255) tCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:4447516‑M1/1‑6 (MQ=255) tCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:9437405‑M1/1‑6 (MQ=255) cGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg > 1:8186360‑M1/1‑5 (MQ=255) cGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg > 1:3158490‑M1/1‑5 (MQ=255) cGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg > 1:458167‑M1/1‑5 (MQ=255) gggTtgtactgccccaaaaaagttggacagttaaacacgaggca < 1:2351135‑M1/44‑41 (MQ=255) gggTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt > 1:895564‑M1/1‑4 (MQ=255) gggTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt > 1:4853143‑M1/1‑4 (MQ=255) gggTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt > 1:9425930‑M1/1‑4 (MQ=255) ggTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc > 1:4449952‑M1/1‑3 (MQ=255) ggTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc < 1:9758482‑M1/51‑49 (MQ=255) gTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct < 1:7985768‑M1/51‑50 (MQ=255) gTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct > 1:3173242‑M1/1‑2 (MQ=255) gTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct > 1:3465359‑M1/1‑2 (MQ=255) gTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct < 1:5043055‑M1/51‑50 (MQ=255) gTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct > 1:4603147‑M1/1‑2 (MQ=255) gTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct > 1:9689436‑M1/1‑2 (MQ=255) gTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtct < 1:4647697‑M1/51‑50 (MQ=255) gTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt < 1:7131795‑M1/49‑48 (MQ=255) | CGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAA > REL606/16924‑17023 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |