| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 16974 | 0 (0.000) | 85 (0.940) | 53/76 | NT | 100% | intergenic (‑16/‑514) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
Only 100 of 122 total aligned reads displayed.
GGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/16925‑16974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < REL606/590471‑590423 GGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTT < 1:7839647/51‑1 GTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG > 1:4256827/1‑51 GTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG > 1:4193822/1‑51 TCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGT > 1:8830608/1‑51 TCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGT > 1:5989096/1‑51 TCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGT > 1:5323465/1‑51 CAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTA > 1:9289479/1‑51 CAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTA > 1:1336212/1‑51 AGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTAC > 1:3197747/1‑51 AGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTAC > 1:7641410/1‑51 GTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACT < 1:1605510/51‑1 TAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG > 1:8146598/1‑51 TAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG < 1:5485048/51‑1 TAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG > 1:1751578/1‑51 AAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGA > 1:5120035/1‑51 AAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGA > 1:7764242/1‑51 AAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGA > 1:7086843/1‑51 AGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGAC > 1:2892050/1‑51 GAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACC > 1:1668408/1‑51 GAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACC < 1:367243/51‑1 GAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACC > 1:8725966/1‑51 AGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCC > 1:4414341/1‑51 GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCA > 1:9408634/1‑51 CACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAA > 1:9095115/1‑51 ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAA > 1:2034469/1‑51 ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAA > 1:7422697/1‑51 ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAA > 1:7361861/1‑51 CTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAANA < 1:67997/51‑1 CTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA > 1:6596326/1‑51 TCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAA > 1:8531344/1‑51 TCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAA > 1:8235028/1‑51 TCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAA > 1:2216265/1‑51 CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAG < 1:6092822/51‑1 CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAG < 1:1606387/51‑1 TACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGT > 1:4645002/1‑51 CATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTG > 1:5817789/1‑51 CATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTG > 1:10083464/1‑51 CATGTGTTCAGCATACAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTG < 1:9204365/51‑1 ATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAA < 1:2271185/44‑1 taTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACA > 1:246318/3‑51 TGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACA > 1:246320/1‑51 TGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACA < 1:8572890/51‑1 GTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAG > 1:276559/1‑51 GTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACA < 1:5606207/50‑1 TCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTT > 1:4116632/1‑51 TCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTT > 1:7551162/1‑51 CAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:2398775/51‑1 CAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:2946194/1‑51 AGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:3427755/1‑51 AGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:10235998/51‑1 GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:6221948/51‑1 CATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 1:7525612/1‑51 CATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:2422622/51‑1 CATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 1:5839960/1‑51 ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAANA < 1:2106667/51‑1 ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:10059291/51‑1 ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:7341015/51‑1 ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:148937/1‑51 ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:1489958/1‑51 ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:3478615/51‑1 TATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 1:2995240/51‑1 ATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG < 1:7515087/51‑1 ATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG < 1:6993079/51‑1 ATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:891605/1‑46 ATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:6640044/1‑46 TAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 1:400007/1‑51 TAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA < 1:192366/51‑1 AGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:665343/1‑51 AGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG < 1:3404496/51‑1 GGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:626840/1‑51 GGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGC < 1:7187195/51‑1 GGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT < 1:9547812/51‑1 GGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT > 1:583960/1‑51 GCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA < 1:1459143/51‑1 GCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA > 1:4847520/1‑51 CCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT < 1:9589289/51‑1 CTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 1:10720310/1‑51 CTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 1:1431312/1‑51 TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:4447516/1‑51 TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:10508266/1‑51 CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 1:458167/1‑51 CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 1:3158490/1‑51 CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG < 1:5313603/51‑1 CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 1:8186360/1‑51 CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 1:5729366/1‑49 GGGTTGTACTGCCCCAAAAAAGTTGGACAGTTAAACACGAGGCA < 1:2351135/44‑1 GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:895564/1‑51 GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:4853143/1‑51 GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:9425930/1‑51 GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC < 1:9758482/51‑1 GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 1:4449952/1‑51 GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 1:4515187/1‑51 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 1:4647697/51‑1 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 1:7985768/51‑1 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT > 1:3465359/1‑51 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 1:5043055/51‑1 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT > 1:3173242/1‑51 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < 1:2015043/51‑1 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT > 1:9689436/1‑51 GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT < 1:7131795/49‑1 GGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/16925‑16974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT < REL606/590471‑590423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |