| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3697156 = | NA (NA) | 124 (1.310) | 64/80 | NT | NA | coding (280/4134 nt) | rhsA | rhsA element core protein RshA |
| ? | REL606 | 3893553 = | NA (NA) | intergenic (+8/‑48) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein | |||||
Only 100 of 147 total aligned reads displayed.
TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3697204‑3697156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > REL606/3893553‑3893599 TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCT < 1:9895639/51‑1TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCT > 1:5964457/1‑51TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCT < 1:10293993/51‑1TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCT < 1:8753068/51‑1TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCT < 1:10372078/51‑1 GTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTG < 1:3517772/51‑1 GTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTG > 1:5829376/1‑51 TATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTA < 1:10253566/51‑1 ATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTAC > 1:8576977/1‑51 TCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACT < 1:8592446/51‑1 CGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTG > 1:7333163/1‑51 CGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTG > 1:7827707/1‑51 CGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTG < 1:10363709/51‑1 CGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTG < 1:1489230/51‑1 CGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCA > 1:10241649/1‑51 GCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCAC < 1:10823588/51‑1 CAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACC < 1:1717869/51‑1 GCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCA < 1:10557891/51‑1 GCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCA > 1:6136370/1‑51 GCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCA < 1:2717623/51‑1 CTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCAT < 1:5542592/51‑1 CTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCCGTACTGCACCCAT > 1:9103111/1‑51 TGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATT < 1:6028687/51‑1 TGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATT > 1:8150521/1‑51 TGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATT > 1:2243992/1‑51 GTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTT < 1:4879343/51‑1 GTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTT < 1:4249590/51‑1 GTAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTT < 1:114304/51‑1 TAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCTCCCATTTT < 1:2887888/51‑1 TAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTT > 1:2875999/1‑51 TAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTT < 1:8288658/51‑1 TAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTT > 1:5124079/1‑51 TAAGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTT < 1:7989379/51‑1 AAGCGGATATCCGCAGGCGTTTTCCAGCCGGGCTGTACTGCACCCATTTT > 1:7881598/1‑50 AGCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGT < 1:1945405/51‑1 GCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTT > 1:9400116/1‑51 GCGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTT < 1:1694494/51‑1 CGGGTATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTG > 1:7135365/1‑51 CGGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTG > 1:713734/1‑51 GGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGG < 1:5629171/51‑1 GGATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGG > 1:2352422/1‑51 GATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGA < 1:5157864/51‑1 GATATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGA > 1:7656371/1‑51 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACG > 1:2582570/1‑51 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACG < 1:2500853/51‑1 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACG > 1:6183063/1‑51 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACG < 1:2193120/51‑1 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACG < 1:4900949/51‑1 TATCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGAC < 1:6018169/50‑1 TCCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGAT > 1:3428302/1‑51 CCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATG < 1:8116626/51‑1 CCGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATG > 1:8166305/1‑51 CGCAGGCTTTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGA < 1:1584255/48‑1 CGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGA > 1:2073840/1‑51 CGCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGA > 1:9581705/1‑51 GCAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAA > 1:1923576/1‑51 CAGGCATTTTCCAGCCGGGTTGTACTGCACCCATTTTGTTGGACGATGAAA < 1:6267000/51‑1 CAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAA < 1:5613925/51‑1 CAGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAA > 1:9037108/1‑51 AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAAT > 1:3026885/1‑51 AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAAT > 1:6815217/1‑51 AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAAT > 1:329228/1‑51 AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAAT > 1:1358081/1‑51 AGGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAAT > 1:2020054/1‑51 GGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATG > 1:4762869/1‑51 GGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATG < 1:5363025/51‑1 GGCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATG < 1:1473828/51‑1 GCATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGG < 1:2328124/51‑1 GCATTTTCCAGCCGGGCTGTACTACACCCATTTTGTTGGACGATGAAATGG > 1:10531306/1‑51 CATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGA > 1:8643826/1‑51 ATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 1:6074949/1‑51 ATTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA > 1:9695614/1‑51 TTTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACG < 1:9332395/39‑1 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 1:1449931/1‑51 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:337203/51‑1 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 1:3820919/1‑51 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:858860/51‑1 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 1:9467307/1‑51 TTTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:10726668/51‑1 TTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG > 1:1527088/1‑51 TTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 1:9485019/51‑1 TTCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 1:2842177/51‑1 TCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 1:8889741/51‑1 TCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 1:763992/51‑1 TCCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC > 1:3088509/1‑51 CCAGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC < 1:3328921/51‑1 AGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC > 1:4719247/1‑51 AGCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC > 1:9277070/1‑51 GCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT > 1:7208928/1‑51 GCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:3947899/51‑1 GCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:8273679/51‑1 GCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:985885/51‑1 GCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:735232/51‑1 GCCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATG > 1:3292558/1‑40 CCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:4624561/51‑1 CCGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:2967007/51‑1 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 1:111990/51‑1 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 1:3452941/51‑1 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:135050/1‑51 CGGGCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 1:6431894/51‑1 TGTTATCGCGCAGCTGTAAGCGGATATCCGCAGGCATTTTCCAGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3697204‑3697156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > REL606/3893553‑3893599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |