New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3697156 =NA (NA)124 (1.310) 64/80 NT NA coding (280/4134 nt) rhsA rhsA element core protein RshA
?REL606 3893553 = NA (NA)intergenic (+8/‑48) kup/insJ‑5 potassium transporter/IS150 hypothetical protein

Only 100 of 148 total aligned reads displayed.

GCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA  >  REL606/3893503‑3893601
                                                  |                                                
gCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGAc                                                  >  1:4088478/1‑51 (MQ=255)
gCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGAc                                                  >  1:9166384/1‑51 (MQ=255)
 ccAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACt                                                 >  1:8799539/1‑51 (MQ=255)
  cAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTg                                                <  1:6098321/51‑1 (MQ=255)
  cAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTg                                                >  1:1909281/1‑51 (MQ=255)
   aaaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGt                                               >  1:9180144/1‑51 (MQ=255)
   aaaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGt                                               >  1:2910859/1‑51 (MQ=255)
   aaaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGt                                               >  1:10834055/1‑51 (MQ=255)
    aaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTa                                              <  1:9961739/51‑1 (MQ=255)
      cAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACt                                            >  1:10531602/1‑51 (MQ=255)
      cAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACt                                            >  1:4342993/1‑51 (MQ=255)
      cAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACt                                            >  1:7714836/1‑51 (MQ=255)
      cAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACt                                            <  1:5054221/51‑1 (MQ=255)
       aGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg                                           <  1:6156140/51‑1 (MQ=255)
       aGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg                                           >  1:9765093/1‑51 (MQ=255)
       aGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg                                           >  1:9033897/1‑51 (MQ=255)
       aGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg                                           >  1:7936602/1‑51 (MQ=255)
       aGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg                                           <  1:8226110/51‑1 (MQ=255)
        gggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGc                                          >  1:8632177/1‑51 (MQ=255)
         ggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCa                                         <  1:836163/51‑1 (MQ=255)
         ggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCa                                         <  1:1353539/51‑1 (MQ=255)
         ggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCa                                         <  1:9337201/51‑1 (MQ=255)
         ggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCa                                         <  1:5116198/51‑1 (MQ=255)
           ttATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAcc                                       >  1:3637117/1‑51 (MQ=255)
           ttATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAcc                                       <  1:9390700/51‑1 (MQ=255)
           ttATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAcc                                       <  1:10295289/51‑1 (MQ=255)
            tATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAccc                                      <  1:1948045/51‑1 (MQ=255)
            tATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAccc                                      >  1:548716/1‑51 (MQ=255)
             aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa                                     <  1:5056195/51‑1 (MQ=255)
             aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa                                     <  1:8339915/51‑1 (MQ=255)
             aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa                                     <  1:6282076/51‑1 (MQ=255)
             aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa                                     <  1:3417591/51‑1 (MQ=255)
             aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCa                                     <  1:6105604/51‑1 (MQ=255)
              tCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAt                                    <  1:10909862/51‑1 (MQ=255)
               cGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAtt                                   >  1:9044813/1‑51 (MQ=255)
                gAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAttt                                  <  1:2230028/51‑1 (MQ=255)
                gAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAttt                                  >  1:6897465/1‑51 (MQ=255)
                 aaCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAtttt                                 >  1:3074057/1‑51 (MQ=255)
                  aCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttg                                >  1:6175840/1‑51 (MQ=255)
                   cTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgt                               >  1:7051758/1‑51 (MQ=255)
                   cTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgt                               <  1:5888390/51‑1 (MQ=255)
                    tGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgtt                              >  1:1778447/1‑51 (MQ=255)
                      ggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTgg                            <  1:2822161/51‑1 (MQ=255)
                      ggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTgg                            >  1:9378290/1‑51 (MQ=255)
                      ggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTgg                            <  1:8242681/51‑1 (MQ=255)
                       gTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGa                           <  1:1318754/51‑1 (MQ=255)
                       gTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGa                           <  1:492259/51‑1 (MQ=255)
                        tACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc                          >  1:1708229/1‑51 (MQ=255)
                        tACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc                          <  1:9309025/51‑1 (MQ=255)
                         aCTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACg                         >  1:8019382/1‑51 (MQ=255)
                         aCTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACg                         >  1:868518/1‑51 (MQ=255)
                          cTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa                        >  1:10821320/1‑51 (MQ=255)
                          cTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa                        >  1:4785886/1‑51 (MQ=255)
                           tCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGAt                       <  1:3706217/51‑1 (MQ=255)
                           tCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGAt                       >  1:2585658/1‑51 (MQ=255)
                            cAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATg                      >  1:6489116/1‑51 (MQ=255)
                            cAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATg                      <  1:1112617/51‑1 (MQ=255)
                             aGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa                     >  1:5373033/1‑51 (MQ=255)
                             aGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa                     <  1:5068275/51‑1 (MQ=255)
                              ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa                    <  1:73816/51‑1 (MQ=255)
                              ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa                    <  1:10662479/51‑1 (MQ=255)
                              ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa                    <  1:5870255/51‑1 (MQ=255)
                              ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa                    >  1:8067677/1‑51 (MQ=255)
                              ggTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa                    <  1:1196949/51‑1 (MQ=255)
                                tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt                  >  1:1611691/1‑51 (MQ=255)
                                tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt                  <  1:3402796/51‑1 (MQ=255)
                                tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt                  >  1:4764188/1‑51 (MQ=255)
                                tCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt                  >  1:7241292/1‑51 (MQ=255)
                                 cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATg                 <  1:1657444/51‑1 (MQ=255)
                                 cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATg                 <  1:5284079/51‑1 (MQ=255)
                                  gAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATgg                <  1:10766570/51‑1 (MQ=255)
                                   aaaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGa               <  1:10257247/51‑1 (MQ=255)
                                   aaaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGa               >  1:307292/1‑51 (MQ=255)
                                    aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa              >  1:7376165/1‑51 (MQ=255)
                                    aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa              <  1:2194596/51‑1 (MQ=255)
                                     aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt             >  1:5283302/1‑51 (MQ=255)
                                     aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt             <  1:7582427/51‑1 (MQ=255)
                                      tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa            >  1:7973901/1‑51 (MQ=255)
                                      tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa            <  1:2063118/51‑1 (MQ=255)
                                      tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa            <  1:2270214/51‑1 (MQ=255)
                                      tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa            <  1:5499956/51‑1 (MQ=255)
                                       cTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAg           >  1:4635512/1‑51 (MQ=255)
                                        tAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc          >  1:7513431/1‑51 (MQ=255)
                                         aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa            <  1:2925144/48‑1 (MQ=255)
                                          aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc        >  1:4292986/1‑51 (MQ=255)
                                          aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc        <  1:7007078/51‑1 (MQ=255)
                                          aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc        <  1:7191698/51‑1 (MQ=255)
                                          aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc        >  1:4461796/1‑51 (MQ=255)
                                           cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc       >  1:6687293/1‑51 (MQ=255)
                                           cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc       >  1:6720716/1‑51 (MQ=255)
                                            gCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt      <  1:5765465/51‑1 (MQ=255)
                                            gCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt      <  1:7438542/51‑1 (MQ=255)
                                            gCCAGACTGTACTGCACCCATTTTGTTAGACGATGAAATGGAATAGCCCCt      <  1:7731718/51‑1 (MQ=255)
                                             ccAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa     >  1:4956105/1‑51 (MQ=40)
                                             ccAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa     >  1:4020073/1‑51 (MQ=40)
                                              cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa    <  1:5529550/51‑1 (MQ=38)
                                              cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa    <  1:894067/51‑1 (MQ=38)
                                               aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat   <  1:2664828/51‑1 (MQ=35)
                                               aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat   >  1:6644406/1‑51 (MQ=35)
                                               aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat   <  1:10913548/51‑1 (MQ=35)
                                                  |                                                
GCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA  >  REL606/3893503‑3893601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.