| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2774435 = | NA (NA) | 115 (1.210) | 57/80 | NT | 99.1% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 2999596 | 1 (0.010) | coding (33/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter | |||||
Only 100 of 174 total aligned reads displayed.
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2774484‑2774435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACAGA < REL606/2999596‑2999547 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 1:3174844/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 1:7863525/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC < 1:7430223/51‑1CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC < 1:8159429/51‑1CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC < 1:5725148/51‑1CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 1:3607686/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC < 1:8950634/51‑1CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 1:8836930/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 1:2980916/1‑51CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC < 1:8771953/51‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCGGTACACA < 1:5602911/51‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA > 1:5569019/1‑51 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA > 1:3126273/1‑51 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA > 1:7320432/1‑51 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA < 1:1883312/51‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA < 1:6405176/51‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA > 1:6586867/1‑51 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA > 1:5712543/1‑51 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACA > 1:4450466/1‑51 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAG < 1:9305465/51‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAG > 1:2620500/1‑51 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAG < 1:6212492/51‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGC > 1:7912834/1‑51 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGC < 1:5341109/51‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCT < 1:943193/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTG < 1:6836736/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTG > 1:9631201/1‑51 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGT < 1:1568629/51‑1 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGT < 1:2938200/51‑1 TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTA > 1:9056569/1‑51 TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTA > 1:2337523/1‑51 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAG < 1:2161566/51‑1 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGC > 1:8349512/1‑51 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCT > 1:8514754/1‑51 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTG > 1:129266/1‑51 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTG < 1:9933508/51‑1 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGG > 1:4281377/1‑51 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGG < 1:2780310/51‑1 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGT > 1:4921140/1‑51 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGT > 1:7266522/1‑51 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGT > 1:7551221/1‑51 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGT > 1:8679100/1‑51 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGT > 1:10763666/1‑51 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTG > 1:2897412/1‑51 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGT < 1:5590728/51‑1 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTT > 1:10103606/1‑51 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTT > 1:3742154/1‑51 GTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTC > 1:9179070/1‑51 GTTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTC > 1:8165554/1‑51 TTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCA < 1:10550517/51‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCA < 1:6062783/51‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAG > 1:6334606/1‑51 TTAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTG < 1:10458100/46‑1 TAACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGA > 1:2548489/1‑51 AACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGAT > 1:7049479/1‑51 AACTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGAT > 1:7276819/1‑51 CTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGT > 1:8685339/1‑51 CTGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGT > 1:1604836/1‑51 TGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTC < 1:3777419/51‑1 TGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTC < 1:4910417/51‑1 TGTCCAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTC > 1:4770333/1‑51 CAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTT < 1:7691107/51‑1 CAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTT < 1:4116165/51‑1 CAACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTT < 1:5466208/51‑1 AACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTC < 1:5537683/51‑1 ACTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTC > 1:4610180/1‑50 CTTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCAT > 1:10663662/1‑51 TTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATC > 1:1494453/1‑51 TTTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATC > 1:4511749/1‑51 TTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCA > 1:9931934/1‑51 TTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCA > 1:7946567/1‑51 TTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCA < 1:7328522/51‑1 TTTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCA < 1:2569071/51‑1 TTTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAG > 1:10203957/1‑51 TTGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGC < 1:4818441/51‑1 TGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCT > 1:10949917/1‑51 TGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCT > 1:4146702/1‑51 TGGGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCT > 1:9767238/1‑51 GGGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTT < 1:9575658/51‑1 GGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTT < 1:3255554/51‑1 GGTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTT > 1:1265886/1‑51 GTCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTC > 1:5744886/1‑51 TCAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCC > 1:1681788/1‑51 CAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCT < 1:1990212/51‑1 CAGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCT > 1:5381895/1‑51 AGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTT < 1:9335275/51‑1 AGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTT < 1:7609294/51‑1 AGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTT > 1:1357308/1‑51 AGTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTT < 1:8951082/51‑1 GTACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTA < 1:2917871/51‑1 TACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTAC > 1:4975657/1‑51 TACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTAC < 1:6508689/51‑1 ACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACA < 1:7889762/51‑1 ACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACA > 1:472890/1‑51 ACACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACA > 1:7001693/1‑51 CACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACAG > 1:2745915/1‑51 CACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACAG < 1:5120844/51‑1 CACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACAG < 1:4353602/51‑1 ACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACAGA < 1:4378349/51‑1 ACAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACAGA < 1:3984950/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2774484‑2774435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCTGTAGCTGGTGTTCAGATGTCGTTTCATCAGCTTTTCCTTACAGA < REL606/2999596‑2999547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |