Predicted mutation
evidence seq id position mutation freq annotation gene description
JC REL606 1,584,733 10 bp→CGCCGTAT 11.1% coding (663‑672/1191 nt) sotB → sugar efflux transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 158473269 (0.730)7 (0.090)
+CGCCGTAT		 3/64 NT 11.1% coding (662/1191 nt) sotB sugar efflux transporter
?REL606 1584743 = 72 (0.760)coding (673/1191 nt) sotB sugar efflux transporter

TTTGTTAACTGTGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1584715‑1584732
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTACACGGCATACAGCTATATCGAGCCTTTTGTACAAAAC  >  REL606/1584743‑1584784
                  ||||||||                                          
TTTGTTAACTGCGGTGGTCGCCGTATCATTACACGGCATACAG                           <  1:2102383/43‑1
  TGTTAACTGCGGTGGTCGCCGTATCATTACACGGCATAC                             <  1:9436221/39‑1
  TGTTAACTGCGGTGGTCGCCGTATCATTACACGG                                  <  1:9996282/34‑1
           cGGTGGTCGCCGTATCATTACACGGCATACAGCTATATCGAGCCTTTTGTA        <  1:6638802/50‑1
           cGGTGGTCGCCGTATCATTACACGGCATACAGCTATATCGAGCCTTTTGTA        <  1:10595799/50‑1
           cGGTGGTCGCCGTATCATTACACGGCATACAGCTATATCGAGCCTTTTGTA        <  1:6109801/50‑1
           cGGTGGTCGCCGTATCATTACACGGCATACAGCTATATCGAGCCTT             <  1:7297274/45‑1
                 TCGCCGTATCATTACACGGCATACAGCTATATCGAGCCTTTTGTACAAAAC  <  1:8791993/51‑1
                  ||||||||                                          
TTTGTTAACTGTGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/1584715‑1584732
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTACACGGCATACAGCTATATCGAGCCTTTTGTACAAAAC  >  REL606/1584743‑1584784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.