| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 664688 = | NA (NA) | 69 (0.900) | 48/96 | 0.3 | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 1270660 = | 0 (0.000) | intergenic (‑167/+238) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter | |||||
CAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTT > REL606/1270612‑1270710 | tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCg < 1:3909997‑M2/3‑1 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCg > 1:6443433‑M2/49‑51 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCgg > 1:2999551‑M2/48‑51 (MQ=255) ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGa > 1:3581754‑M2/47‑51 (MQ=255) ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGa > 1:2674218‑M2/47‑51 (MQ=255) ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGa < 1:598785‑M2/5‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGAt > 1:4997346‑M2/46‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGAt > 1:32496‑M2/46‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGAt > 1:4808198‑M2/46‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGATa < 1:2909832‑M2/7‑1 (MQ=255) aggggctattccatttcatcgtccaacaaaatgagtgcagtacaCCGGATa < 1:5189533‑M2/7‑1 (MQ=255) ggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGATaa > 1:4214405‑M2/44‑51 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTc < 1:371521‑M2/11‑1 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTc > 1:3871252‑M2/41‑51 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTcc > 1:1872073‑M2/40‑51 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTcc > 1:2622124‑M2/40‑51 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCg > 1:2499836‑M2/39‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGc > 1:1351183‑M2/37‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGc > 1:6332799‑M2/37‑51 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCt < 1:5893378‑M2/16‑1 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCt > 1:2069882‑M2/36‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTg > 1:2693509‑M2/34‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTg > 1:6207797‑M2/34‑51 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTgg < 1:2385052‑M2/19‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTgg > 1:5891853‑M2/33‑51 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGgt > 1:2463806‑M2/32‑51 (MQ=255) catcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGtgtg < 1:5430631‑M2/23‑1 (MQ=255) catcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGtgtg < 1:6747031‑M2/23‑1 (MQ=255) tcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTgg > 1:2410500‑M2/27‑50 (MQ=255) tcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGa < 1:686418‑M2/25‑1 (MQ=255) tcgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGa < 1:1584411‑M2/25‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAt > 1:6337651‑M2/26‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAt < 1:2882684‑M2/26‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAt < 1:2191972‑M2/26‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAt < 1:1394243‑M2/26‑1 (MQ=255) gtccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAta > 1:3744139‑M2/25‑51 (MQ=255) tccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAtac > 1:278686‑M2/24‑51 (MQ=255) ccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAtact > 1:2493555‑M2/23‑51 (MQ=255) ccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAtact > 1:2027805‑M2/23‑51 (MQ=255) ccaacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAtact < 1:6738358‑M2/29‑1 (MQ=255) caacaaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGAtacta > 1:2990183‑M2/22‑51 (MQ=255) aacaaaatgggtgtagtacaCCGGATAATTCCGGCTTGGTGTGGAtactac > 1:5797969‑M2/21‑51 (MQ=255) caaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACtt > 1:2914021‑M2/19‑51 (MQ=255) caaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACtt < 1:546828‑M2/33‑1 (MQ=255) caaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACtt > 1:6342948‑M2/19‑51 (MQ=255) aaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTtc > 1:6198809‑M2/18‑51 (MQ=255) aaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTtc < 1:2183015‑M2/34‑1 (MQ=255) aaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTtc > 1:5937568‑M2/18‑51 (MQ=255) aaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTtc < 1:5035722‑M2/34‑1 (MQ=255) aaaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTtc < 1:7296056‑M2/34‑1 (MQ=255) aaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTtct < 1:3156557‑M2/35‑1 (MQ=255) aaatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTtct > 1:369134‑M2/17‑51 (MQ=255) aatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTtctc > 1:5009054‑M2/16‑51 (MQ=255) aatgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTtctc > 1:569586‑M2/16‑51 (MQ=255) atgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCa < 1:3002090‑M2/37‑1 (MQ=255) atgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCa < 1:6024898‑M2/37‑1 (MQ=255) tgggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCaa > 1:1749466‑M2/14‑51 (MQ=255) gggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAAt < 1:740396‑M2/39‑1 (MQ=255) ggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAAtt < 1:3962932‑M2/40‑1 (MQ=255) tgcagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCa > 1:808909‑M2/10‑51 (MQ=255) cagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATc < 1:4710227‑M2/44‑1 (MQ=255) cagtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATc > 1:1203317‑M2/8‑51 (MQ=255) agtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCt < 1:2220891‑M2/45‑1 (MQ=255) agtacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCt < 1:4828175‑M2/45‑1 (MQ=255) tacaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTc > 1:4388699‑M2/5‑51 (MQ=255) acaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCa < 1:1113458‑M2/48‑1 (MQ=255) acaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCa < 1:1509715‑M2/48‑1 (MQ=255) acaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCa > 1:6806397‑M2/4‑51 (MQ=255) acaCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCa > 1:5535656‑M2/4‑51 (MQ=255) aCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACt > 1:2349202‑M2/2‑51 (MQ=255) aCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACt > 1:1163673‑M2/2‑51 (MQ=255) ccGGATAATTCCGGCTTGGTGTGGATACTATTTCTCAATTCATcttcactt > 1:5078013/1‑51 (MQ=255) ccGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATcttcactt < 1:2974571/51‑1 (MQ=38) ccGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATcttcactt < 1:711047/51‑1 (MQ=38) ccGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATcttcactt < 1:3267806/51‑1 (MQ=38) | CAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTT > REL606/1270612‑1270710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |