New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664688 = | NA (NA) | 69 (0.900) | 48/96 | 0.3 | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | 1270660 = | 0 (0.000) | intergenic (‑167/+238) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter |
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664735‑664688 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACT > REL606/1270660‑1270709 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCG < 1:3909997/51‑1 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCG > 1:6443433/1‑51 ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGG > 1:2999551/1‑51 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGA < 1:598785/51‑1 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGA > 1:2674218/1‑51 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGA > 1:3581754/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGAT > 1:4997346/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGAT > 1:32496/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGAT > 1:4808198/1‑51 AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATA < 1:2909832/51‑1 AGGGGCTATTCCATTTCATCGTCCAACAAAATGAGTGCAGTACACCGGATA < 1:5189533/51‑1 GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAA > 1:4214405/1‑51 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTC > 1:3871252/1‑51 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTC < 1:371521/51‑1 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCC > 1:2622124/1‑51 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCC > 1:1872073/1‑51 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCG > 1:2499836/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGC > 1:6332799/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGC > 1:1351183/1‑51 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCT < 1:5893378/51‑1 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCT > 1:2069882/1‑51 CATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTG > 1:2693509/1‑51 CATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTG > 1:6207797/1‑51 ATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGG > 1:5891853/1‑51 ATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGG < 1:2385052/51‑1 TTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGT > 1:2463806/1‑51 CATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTG < 1:6747031/51‑1 CATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTG < 1:5430631/51‑1 TCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGA < 1:686418/51‑1 TCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGA < 1:1584411/51‑1 TCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGG > 1:2410500/1‑50 CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT > 1:6337651/1‑51 CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT < 1:2882684/51‑1 CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT < 1:2191972/51‑1 CGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAT < 1:1394243/51‑1 GTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATA > 1:3744139/1‑51 TCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATAC > 1:278686/1‑51 CCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACT > 1:2493555/1‑51 CCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACT > 1:2027805/1‑51 CCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACT < 1:6738358/51‑1 CAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTA > 1:2990183/1‑51 AACAAAATGGGTGTAGTACACCGGATAATTCCGGCTTGGTGTGGATACTAC > 1:5797969/1‑51 CAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTT > 1:2914021/1‑51 CAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTT < 1:546828/51‑1 CAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTT > 1:6342948/1‑51 AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC > 1:6198809/1‑51 AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC < 1:5035722/51‑1 AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC > 1:5937568/1‑51 AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC < 1:7296056/51‑1 AAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTC < 1:2183015/51‑1 AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCT > 1:369134/1‑51 AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCT < 1:3156557/51‑1 AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTC > 1:569586/1‑51 AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTC > 1:5009054/1‑51 ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCA < 1:6024898/51‑1 ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCA < 1:3002090/51‑1 TGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAA > 1:1749466/1‑51 GGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAAT < 1:740396/51‑1 GGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATT < 1:3962932/51‑1 TGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCA > 1:808909/1‑51 CAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATC > 1:1203317/1‑51 CAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATC < 1:4710227/51‑1 AGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCT < 1:2220891/51‑1 AGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCT < 1:4828175/51‑1 TACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTC > 1:4388699/1‑51 ACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCA < 1:1509715/51‑1 ACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCA > 1:6806397/1‑51 ACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCA > 1:5535656/1‑51 ACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCA < 1:1113458/51‑1 ACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACT > 1:2349202/1‑51 ACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACT > 1:1163673/1‑51 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664735‑664688 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACT > REL606/1270660‑1270709 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |