| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 547,700 | Δ8,125 bp | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 546959–547698 | 555824–555805 | 8108–8866 | 34 [30] | [0] 78 | [insB‑6]–[ECB_00513] | [insB‑6],insA‑6,nmpC,ybcR,ybcS,ybcT,ybcU,ECB_00510,nohB,ECB_00512,[ECB_00513] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 547699 | NA (NA) | 78 (0.980) | 52/100 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | REL606 | 555825 = | 0 (0.000) | coding (1110/2346 nt) | ECB_00513 | conserved hypothetical protein | |||||
GTATAAATATGTCTTACAGCCACTGCCTGATGTGTGGATACCGTTTAACGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA > REL606/555777‑555874 | cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGa < 1:240348‑M2/3‑1 (MQ=255)cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGa < 1:3832361‑M2/3‑1 (MQ=255)cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGa > 1:7273152‑M2/49‑51 (MQ=255)cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGa < 1:7206043‑M2/3‑1 (MQ=255)cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGa > 1:5652477‑M2/49‑51 (MQ=255)cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGa < 1:5820518‑M2/3‑1 (MQ=255)cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGa > 1:6032036‑M2/49‑51 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGa < 1:5339433‑M2/3‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGAtt < 1:74676‑M2/5‑1 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGATTc > 1:1621587‑M2/46‑51 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGATTc > 1:6294574‑M2/46‑51 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGATTc < 1:1736209‑M2/6‑1 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGATTCa < 1:2591578‑M2/7‑1 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcaccCGATTCACTg < 1:2593732‑M2/10‑1 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcaccCGATTCACTg < 1:262037‑M2/10‑1 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcaccCGATTCACTgg < 1:407544‑M2/11‑1 (MQ=255) ccatcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGata > 1:2315380‑M2/38‑51 (MQ=255) ccatcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGata > 1:246036‑M2/38‑51 (MQ=255) ccatcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGata < 1:4264297‑M2/14‑1 (MQ=255) ccatcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGata < 1:5116479‑M2/14‑1 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGatat < 1:1310880‑M2/15‑1 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGatat > 1:5107158‑M2/37‑51 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGatat < 1:3978640‑M2/15‑1 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGatat < 1:1598798‑M2/15‑1 (MQ=255) atcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGATAtg < 1:1947899‑M2/16‑1 (MQ=255) atcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGATAtg < 1:3233192‑M2/16‑1 (MQ=255) tcatacactaaatcagtaagttggcagcatcaccCGATTCACTGGATAtgc < 1:7073509‑M2/17‑1 (MQ=255) atacactaaatcagtaagttggcagcatcaccCGATTCACTGGATAtgctt < 1:5479435‑M2/19‑1 (MQ=255) atacactaaatcagtaagttggcagcatcaccCGATTCACTGGATAtgctt > 1:5127369‑M2/33‑51 (MQ=255) tacactaaatcagtaagttggcagcatcaccCGATTCACTGGATAtgcttg > 1:3449045‑M2/32‑51 (MQ=255) tacactaaatcagtaagttggcagcatcaccCGATTCACTGGATAtgcttg < 1:5859670‑M2/20‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccCGATTCACTGGATAtgcttgc > 1:6688990‑M2/31‑51 (MQ=255) cactaaatcagtaagttggcagcatcaccCGATTCACTGGATAtgcttgct > 1:4130091‑M2/30‑51 (MQ=255) actaaatcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTg < 1:2481877‑M2/23‑1 (MQ=255) actaaatcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTg > 1:3429004‑M2/29‑51 (MQ=255) actaaatcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTg > 1:376466‑M2/29‑51 (MQ=255) ctaaatcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTgg > 1:4468490‑M2/28‑51 (MQ=255) taaatcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGc < 1:2233541‑M2/25‑1 (MQ=255) taaatcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGc > 1:1820596‑M2/27‑51 (MQ=255) aaatcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCt > 1:6790648‑M2/26‑51 (MQ=255) aaatcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCt < 1:1665137‑M2/26‑1 (MQ=255) aatcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCtt < 1:3942314‑M2/27‑1 (MQ=255) atcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCttt < 1:5020752‑M2/28‑1 (MQ=255) atcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCttt < 1:4685838‑M2/28‑1 (MQ=255) atcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCttt > 1:2136808‑M2/24‑51 (MQ=255) tcagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCtttt < 1:2964389‑M2/29‑1 (MQ=255) cagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTc < 1:5203816‑M2/30‑1 (MQ=255) cagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTc > 1:133211‑M2/22‑51 (MQ=255) cagtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTc < 1:4051276‑M2/30‑1 (MQ=255) agtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCg < 1:1358649‑M2/31‑1 (MQ=255) gtaagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGc > 1:738546‑M2/20‑51 (MQ=255) taagttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGcc < 1:2192818‑M2/33‑1 (MQ=255) agttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTg < 1:3117868‑M2/35‑1 (MQ=255) gttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTgg < 1:6945203‑M2/36‑1 (MQ=255) gttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTgg > 1:3509874‑M2/16‑51 (MQ=255) ttggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGt < 1:7134746‑M2/37‑1 (MQ=255) tggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGtt < 1:904867‑M2/38‑1 (MQ=255) ggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTta > 1:1365855‑M2/13‑51 (MQ=255) ggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTta > 1:1620675‑M2/13‑51 (MQ=255) ggcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTta < 1:6404339‑M2/39‑1 (MQ=255) gcagcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTtat < 1:1347727‑M2/40‑1 (MQ=255) agcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATaa < 1:4195708‑M2/42‑1 (MQ=255) agcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATaa < 1:7297584‑M2/42‑1 (MQ=255) agcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATaa < 1:472533‑M2/42‑1 (MQ=255) agcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATaa < 1:3997086‑M2/42‑1 (MQ=255) gcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTgg < 1:5791901‑M2/36‑1 (MQ=255) gcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAg > 1:3849039‑M2/9‑51 (MQ=255) gcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAg < 1:7028763‑M2/43‑1 (MQ=255) gcatcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAg < 1:435647‑M2/43‑1 (MQ=255) catcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGc > 1:809779‑M2/8‑51 (MQ=255) atcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCa < 1:4356703‑M2/45‑1 (MQ=255) atcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCa > 1:3778161‑M2/7‑51 (MQ=255) atcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCa > 1:5825882‑M2/7‑51 (MQ=255) tcaccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCaa < 1:3713872‑M2/46‑1 (MQ=255) accCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAAt < 1:6951094‑M2/48‑1 (MQ=255) ccCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATa < 1:914973‑M2/49‑1 (MQ=255) cCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATaa > 1:6210412‑M2/2‑51 (MQ=255) cCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATaa < 1:2743902‑M2/50‑1 (MQ=255) | GTATAAATATGTCTTACAGCCACTGCCTGATGTGTGGATACCGTTTAACGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA > REL606/555777‑555874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |