| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 547,700 | Δ8,125 bp | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 546959–547698 | 555824–555805 | 8108–8866 | 34 [30] | [0] 78 | [insB‑6]–[ECB_00513] | [insB‑6],insA‑6,nmpC,ybcR,ybcS,ybcT,ybcU,ECB_00510,nohB,ECB_00512,[ECB_00513] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 547699 | NA (NA) | 78 (0.980) | 52/100 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | REL606 | 555825 = | 0 (0.000) | coding (1110/2346 nt) | ECB_00513 | conserved hypothetical protein | |||||
CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/547652‑547699‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA > REL606/555825‑555874 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA < 1:240348/51‑1CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA < 1:3832361/51‑1CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA > 1:7273152/1‑51CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA < 1:7206043/51‑1CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA > 1:5652477/1‑51CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA < 1:5820518/51‑1CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA > 1:6032036/1‑51 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA < 1:5339433/50‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATT < 1:74676/51‑1 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTC > 1:1621587/1‑51 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTC > 1:6294574/1‑51 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTC < 1:1736209/51‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCA < 1:2591578/51‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTG < 1:2593732/51‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTG < 1:262037/51‑1 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGG < 1:407544/51‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATA > 1:2315380/1‑51 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATA > 1:246036/1‑51 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATA < 1:4264297/51‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATA < 1:5116479/51‑1 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATAT < 1:1310880/51‑1 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATAT > 1:5107158/1‑51 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATAT < 1:3978640/51‑1 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATAT < 1:1598798/51‑1 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATG < 1:1947899/51‑1 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATG < 1:3233192/51‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGC < 1:7073509/51‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTT < 1:5479435/51‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTT > 1:5127369/1‑51 TACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTG > 1:3449045/1‑51 TACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTG < 1:5859670/51‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGC > 1:6688990/1‑51 CACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCT > 1:4130091/1‑51 ACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTG > 1:3429004/1‑51 ACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTG > 1:376466/1‑51 ACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTG < 1:2481877/51‑1 CTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGG > 1:4468490/1‑51 TAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGC > 1:1820596/1‑51 TAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGC < 1:2233541/51‑1 AAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCT > 1:6790648/1‑51 AAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCT < 1:1665137/51‑1 AATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTT < 1:3942314/51‑1 ATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTT < 1:5020752/51‑1 ATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTT < 1:4685838/51‑1 ATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTT > 1:2136808/1‑51 TCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTT < 1:2964389/51‑1 CAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTC < 1:4051276/51‑1 CAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTC > 1:133211/1‑51 CAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTC < 1:5203816/51‑1 AGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCG < 1:1358649/51‑1 GTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGC > 1:738546/1‑51 TAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCC < 1:2192818/51‑1 AGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTG < 1:3117868/51‑1 GTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGG > 1:3509874/1‑51 GTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGG < 1:6945203/51‑1 TTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGT < 1:7134746/51‑1 TGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTT < 1:904867/51‑1 GGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTA > 1:1365855/1‑51 GGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTA > 1:1620675/1‑51 GGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTA < 1:6404339/51‑1 GCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTAT < 1:1347727/51‑1 AGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAA < 1:3997086/51‑1 AGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAA < 1:4195708/51‑1 AGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAA < 1:7297584/51‑1 AGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAA < 1:472533/51‑1 GCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAG > 1:3849039/1‑51 GCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAG < 1:435647/51‑1 GCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAG < 1:7028763/51‑1 GCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGG < 1:5791901/44‑1 CATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGC > 1:809779/1‑51 ATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCA < 1:4356703/51‑1 ATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCA > 1:5825882/1‑51 ATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCA > 1:3778161/1‑51 TCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAA < 1:3713872/51‑1 ACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAAT < 1:6951094/51‑1 CCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATA < 1:914973/51‑1 CCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA < 1:2743902/51‑1 CCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA > 1:6210412/1‑51 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/547652‑547699‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA > REL606/555825‑555874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |